Gene : Seita.3G351600 S. italica v2.2
Defline:  (1 of 2) PTHR21736:SF20 - PROTEIN OBERON 1-RELATED Genomic Order:  3516
Name:  ? Seita.3G351600 Secondary Identifier:  ? PAC:32714047
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G351600 0.5kb upstream 0.5kb upstream 4773 true scaffold_3: 45088636-45093408 Setaria italica
Seita.3G351600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45088636-45089135 Setaria italica
Seita.3G351600 0.5kb downstream 0.5kb downstream 4773 true scaffold_3: 45089136-45093908 Setaria italica
Seita.3G351600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45093409-45093908 Setaria italica
Seita.3G351600 1.0kb upstream 1.0kb upstream 5273 true scaffold_3: 45088136-45093408 Setaria italica
Seita.3G351600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45088136-45089135 Setaria italica
Seita.3G351600 1.0kb downstream 1.0kb downstream 5273 true scaffold_3: 45089136-45094408 Setaria italica
Seita.3G351600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45093409-45094408 Setaria italica
Seita.3G351600 2.0kb upstream 2.0kb upstream 6273 true scaffold_3: 45087136-45093408 Setaria italica
Seita.3G351600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45087136-45089135 Setaria italica
Seita.3G351600 2.0kb downstream 2.0kb downstream 6273 true scaffold_3: 45089136-45095408 Setaria italica
Seita.3G351600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45093409-45095408 Setaria italica
Seita.3G351600 5.0kb upstream 5.0kb upstream 9273 true scaffold_3: 45084136-45093408 Setaria italica
Seita.3G351600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45084136-45089135 Setaria italica
Seita.3G351600 5.0kb downstream 5.0kb downstream 9273 true scaffold_3: 45089136-45098408 Setaria italica
Seita.3G351600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45093409-45098408 Setaria italica
Seita.3G351600 10.0kb upstream 10.0kb upstream 14273 true scaffold_3: 45079136-45093408 Setaria italica
Seita.3G351600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45079136-45089135 Setaria italica
Seita.3G351600 10.0kb downstream 10.0kb downstream 14273 true scaffold_3: 45089136-45103408 Setaria italica
Seita.3G351600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45093409-45103408 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185096 5267 Panicoideae View MSA
124578887 5269 Grass View MSA
122041658 5273 Angiosperm View MSA
121346503 5274 Embryophyte View MSA
123380393 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.028     High High
cufflinks 22.559     High  
cufflinks 18.445     High Low
cufflinks 20.809     High  
cufflinks 22.024     High  
cufflinks 24.105     High  
cufflinks 21.335     High  
cufflinks 15.181     High Low
cufflinks 18.496     High Low
cufflinks 21.652     High  
cufflinks 26.378     High  
cufflinks 31.401     High High
cufflinks 28.066     High  
cufflinks 24.121     High  
cufflinks 33.131     High High
cufflinks 19.643     High  
cufflinks 28.445     High  
cufflinks 32.981     High High
cufflinks 17.732     High Low
cufflinks 27.852     High  

0 Strain