Gene : Seita.3G356800 S. italica v2.2
Genomic Order:  3568 Name:  ? Seita.3G356800
Secondary Identifier:  ? PAC:32710782
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G356800 0.5kb upstream 0.5kb upstream 986 true scaffold_3: 45801921-45802906 Setaria italica
Seita.3G356800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45801921-45802420 Setaria italica
Seita.3G356800 0.5kb downstream 0.5kb downstream 986 true scaffold_3: 45802421-45803406 Setaria italica
Seita.3G356800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45802907-45803406 Setaria italica
Seita.3G356800 1.0kb upstream 1.0kb upstream 1486 true scaffold_3: 45801421-45802906 Setaria italica
Seita.3G356800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45801421-45802420 Setaria italica
Seita.3G356800 1.0kb downstream 1.0kb downstream 1486 true scaffold_3: 45802421-45803906 Setaria italica
Seita.3G356800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45802907-45803906 Setaria italica
Seita.3G356800 2.0kb upstream 2.0kb upstream 2486 true scaffold_3: 45800421-45802906 Setaria italica
Seita.3G356800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45800421-45802420 Setaria italica
Seita.3G356800 2.0kb downstream 2.0kb downstream 2486 true scaffold_3: 45802421-45804906 Setaria italica
Seita.3G356800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45802907-45804906 Setaria italica
Seita.3G356800 5.0kb upstream 5.0kb upstream 5486 true scaffold_3: 45797421-45802906 Setaria italica
Seita.3G356800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45797421-45802420 Setaria italica
Seita.3G356800 5.0kb downstream 5.0kb downstream 5486 true scaffold_3: 45802421-45807906 Setaria italica
Seita.3G356800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45802907-45807906 Setaria italica
Seita.3G356800 10.0kb upstream 10.0kb upstream 10486 true scaffold_3: 45792421-45802906 Setaria italica
Seita.3G356800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45792421-45802420 Setaria italica
Seita.3G356800 10.0kb downstream 10.0kb downstream 10486 true scaffold_3: 45802421-45812906 Setaria italica
Seita.3G356800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45802907-45812906 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197342 5267 Panicoideae View MSA
124591138 5269 Grass View MSA
122051638 5273 Angiosperm View MSA
121312593 5274 Embryophyte View MSA
123349751 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.438       High
cufflinks 0.547       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.636       High
cufflinks 0.27        
cufflinks 0.171        
cufflinks 0.076     Low  
cufflinks 0.172     Low  
cufflinks 0.301        
cufflinks 0.107     Low  
cufflinks 0.135     Low  
cufflinks 0.187        
cufflinks 0.081     Low  
cufflinks 0.043     Low Low
cufflinks 0.151        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low Low
cufflinks 0.109     Low  

0 Strain