Gene : Seita.3G358000 S. italica v2.2
Defline:  (1 of 2) PTHR33403:SF1 - PROTEIN SPIRAL1 Genomic Order:  3580
Name:  ? Seita.3G358000 Secondary Identifier:  ? PAC:32713104
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G358000 0.5kb upstream 0.5kb upstream 3731 true scaffold_3: 45949499-45953229 Setaria italica
Seita.3G358000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 45949499-45949998 Setaria italica
Seita.3G358000 0.5kb downstream 0.5kb downstream 3731 true scaffold_3: 45949999-45953729 Setaria italica
Seita.3G358000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 45953230-45953729 Setaria italica
Seita.3G358000 1.0kb upstream 1.0kb upstream 4231 true scaffold_3: 45948999-45953229 Setaria italica
Seita.3G358000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 45948999-45949998 Setaria italica
Seita.3G358000 1.0kb downstream 1.0kb downstream 4231 true scaffold_3: 45949999-45954229 Setaria italica
Seita.3G358000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 45953230-45954229 Setaria italica
Seita.3G358000 2.0kb upstream 2.0kb upstream 5231 true scaffold_3: 45947999-45953229 Setaria italica
Seita.3G358000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 45947999-45949998 Setaria italica
Seita.3G358000 2.0kb downstream 2.0kb downstream 5231 true scaffold_3: 45949999-45955229 Setaria italica
Seita.3G358000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 45953230-45955229 Setaria italica
Seita.3G358000 5.0kb upstream 5.0kb upstream 8231 true scaffold_3: 45944999-45953229 Setaria italica
Seita.3G358000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 45944999-45949998 Setaria italica
Seita.3G358000 5.0kb downstream 5.0kb downstream 8231 true scaffold_3: 45949999-45958229 Setaria italica
Seita.3G358000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 45953230-45958229 Setaria italica
Seita.3G358000 10.0kb upstream 10.0kb upstream 13231 true scaffold_3: 45939999-45953229 Setaria italica
Seita.3G358000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 45939999-45949998 Setaria italica
Seita.3G358000 10.0kb downstream 10.0kb downstream 13231 true scaffold_3: 45949999-45963229 Setaria italica
Seita.3G358000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 45953230-45963229 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175206 5267 Panicoideae View MSA
124586243 5269 Grass View MSA
122045105 5273 Angiosperm View MSA
121351504 5274 Embryophyte View MSA
123425662 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.837     High  
cufflinks 52.431     High  
cufflinks 45.768     High  
cufflinks 47.293     High  
cufflinks 43.873     High  
cufflinks 63.521     High  
cufflinks 67.468     High  
cufflinks 73.65     High High
cufflinks 39.439     High Low
cufflinks 72.913     High High
cufflinks 48.94     High  
cufflinks 58.9     High  
cufflinks 86.429     High High
cufflinks 25.226     High Low
cufflinks 68.888     High  
cufflinks 52.59     High  
cufflinks 71.368     High  
cufflinks 42.127     High  
cufflinks 48.224     High  
cufflinks 71.754     High  

0 Strain