Gene : Seita.3G361700 S. italica v2.2
Defline:  (1 of 2) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  3617
Name:  ? Seita.3G361700 Secondary Identifier:  ? PAC:32710687
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica GLUCOSE1PMETAB-PWY Setaria italica pathologic  
Sitalica PWY-621 Setaria italica pathologic  
Sitalica PWY-7238 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G361700 0.5kb upstream 0.5kb upstream 4502 true scaffold_3: 46474966-46479467 Setaria italica
Seita.3G361700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 46478968-46479467 Setaria italica
Seita.3G361700 0.5kb downstream 0.5kb downstream 4502 true scaffold_3: 46474466-46478967 Setaria italica
Seita.3G361700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 46474466-46474965 Setaria italica
Seita.3G361700 1.0kb upstream 1.0kb upstream 5002 true scaffold_3: 46474966-46479967 Setaria italica
Seita.3G361700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 46478968-46479967 Setaria italica
Seita.3G361700 1.0kb downstream 1.0kb downstream 5002 true scaffold_3: 46473966-46478967 Setaria italica
Seita.3G361700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 46473966-46474965 Setaria italica
Seita.3G361700 2.0kb upstream 2.0kb upstream 6002 true scaffold_3: 46474966-46480967 Setaria italica
Seita.3G361700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 46478968-46480967 Setaria italica
Seita.3G361700 2.0kb downstream 2.0kb downstream 6002 true scaffold_3: 46472966-46478967 Setaria italica
Seita.3G361700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 46472966-46474965 Setaria italica
Seita.3G361700 5.0kb upstream 5.0kb upstream 9002 true scaffold_3: 46474966-46483967 Setaria italica
Seita.3G361700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 46478968-46483967 Setaria italica
Seita.3G361700 5.0kb downstream 5.0kb downstream 9002 true scaffold_3: 46469966-46478967 Setaria italica
Seita.3G361700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 46469966-46474965 Setaria italica
Seita.3G361700 10.0kb upstream 10.0kb upstream 14002 true scaffold_3: 46474966-46488967 Setaria italica
Seita.3G361700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 46478968-46488967 Setaria italica
Seita.3G361700 10.0kb downstream 10.0kb downstream 14002 true scaffold_3: 46464966-46478967 Setaria italica
Seita.3G361700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 46464966-46474965 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122066014 5267 Panicoideae View MSA
124365216 5269 Grass View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.981     High High
cufflinks 16.308     High  
cufflinks 20.023     High  
cufflinks 15.926     High  
cufflinks 11.621     High  
cufflinks 14.462     High  
cufflinks 16.378     High  
cufflinks 15.674     High  
cufflinks 11.498        
cufflinks 11.89        
cufflinks 15.75     High  
cufflinks 8.516       Low
cufflinks 8.502       Low
cufflinks 15.928     High  
cufflinks 14.761     High  
cufflinks 33.18     High High
cufflinks 12.182        
cufflinks 40.338     High High
cufflinks 14.428     High  
cufflinks 9.461       Low

0 Strain