Gene : Seita.3G361800 S. italica v2.2
Defline:  (1 of 10) PF01918 - Alba (Alba) Genomic Order:  3618
Name:  ? Seita.3G361800 Secondary Identifier:  ? PAC:32712591
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G361800 0.5kb upstream 0.5kb upstream 2066 true scaffold_3: 46501273-46503338 Setaria italica
Seita.3G361800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 46501273-46501772 Setaria italica
Seita.3G361800 0.5kb downstream 0.5kb downstream 2066 true scaffold_3: 46501773-46503838 Setaria italica
Seita.3G361800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 46503339-46503838 Setaria italica
Seita.3G361800 1.0kb upstream 1.0kb upstream 2566 true scaffold_3: 46500773-46503338 Setaria italica
Seita.3G361800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 46500773-46501772 Setaria italica
Seita.3G361800 1.0kb downstream 1.0kb downstream 2566 true scaffold_3: 46501773-46504338 Setaria italica
Seita.3G361800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 46503339-46504338 Setaria italica
Seita.3G361800 2.0kb upstream 2.0kb upstream 3566 true scaffold_3: 46499773-46503338 Setaria italica
Seita.3G361800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 46499773-46501772 Setaria italica
Seita.3G361800 2.0kb downstream 2.0kb downstream 3566 true scaffold_3: 46501773-46505338 Setaria italica
Seita.3G361800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 46503339-46505338 Setaria italica
Seita.3G361800 5.0kb upstream 5.0kb upstream 6566 true scaffold_3: 46496773-46503338 Setaria italica
Seita.3G361800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 46496773-46501772 Setaria italica
Seita.3G361800 5.0kb downstream 5.0kb downstream 6566 true scaffold_3: 46501773-46508338 Setaria italica
Seita.3G361800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 46503339-46508338 Setaria italica
Seita.3G361800 10.0kb upstream 10.0kb upstream 11566 true scaffold_3: 46491773-46503338 Setaria italica
Seita.3G361800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 46491773-46501772 Setaria italica
Seita.3G361800 10.0kb downstream 10.0kb downstream 11566 true scaffold_3: 46501773-46513338 Setaria italica
Seita.3G361800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 46503339-46513338 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185955 5267 Panicoideae View MSA
124570664 5269 Grass View MSA
122042167 5273 Angiosperm View MSA
121346259 5274 Embryophyte View MSA
123428257 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.082     Low  
cufflinks 0.595        
cufflinks 0.024     Low Low
cufflinks 0.065     Low  
cufflinks 0.035     Low Low
cufflinks 0.987       High
cufflinks 0.197        
cufflinks 0.084     Low  
cufflinks 0.091     Low  
cufflinks 0.053     Low  
cufflinks 0.149        
cufflinks 0.287        
cufflinks 0.818       High
cufflinks 0.065     Low  
cufflinks 1.256       High
cufflinks 0.129        
cufflinks 1.203       High
cufflinks 0.076     Low  
cufflinks 0.104        
cufflinks 0.857       High

0 Strain