Gene : Seita.3G366500 S. italica v2.2
Defline:  (1 of 2) PTHR13900 - TRANSCRIPTION INITIATION FACTOR TFIID Genomic Order:  3665
Name:  ? Seita.3G366500 Secondary Identifier:  ? PAC:32710135
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G366500 0.5kb upstream 0.5kb upstream 14840 true scaffold_3: 46981013-46995852 Setaria italica
Seita.3G366500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 46995353-46995852 Setaria italica
Seita.3G366500 0.5kb downstream 0.5kb downstream 14840 true scaffold_3: 46980513-46995352 Setaria italica
Seita.3G366500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 46980513-46981012 Setaria italica
Seita.3G366500 1.0kb upstream 1.0kb upstream 15340 true scaffold_3: 46981013-46996352 Setaria italica
Seita.3G366500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 46995353-46996352 Setaria italica
Seita.3G366500 1.0kb downstream 1.0kb downstream 15340 true scaffold_3: 46980013-46995352 Setaria italica
Seita.3G366500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 46980013-46981012 Setaria italica
Seita.3G366500 2.0kb upstream 2.0kb upstream 16340 true scaffold_3: 46981013-46997352 Setaria italica
Seita.3G366500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 46995353-46997352 Setaria italica
Seita.3G366500 2.0kb downstream 2.0kb downstream 16340 true scaffold_3: 46979013-46995352 Setaria italica
Seita.3G366500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 46979013-46981012 Setaria italica
Seita.3G366500 5.0kb upstream 5.0kb upstream 19340 true scaffold_3: 46981013-47000352 Setaria italica
Seita.3G366500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 46995353-47000352 Setaria italica
Seita.3G366500 5.0kb downstream 5.0kb downstream 19340 true scaffold_3: 46976013-46995352 Setaria italica
Seita.3G366500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 46976013-46981012 Setaria italica
Seita.3G366500 10.0kb upstream 10.0kb upstream 24340 true scaffold_3: 46981013-47005352 Setaria italica
Seita.3G366500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 46995353-47005352 Setaria italica
Seita.3G366500 10.0kb downstream 10.0kb downstream 24340 true scaffold_3: 46971013-46995352 Setaria italica
Seita.3G366500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 46971013-46981012 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183649 5267 Panicoideae View MSA
124465751 5269 Grass View MSA
122046359 5273 Angiosperm View MSA
121347140 5274 Embryophyte View MSA
123423919 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.105     Low High
cufflinks 0.041     Low  
cufflinks 0.021     Low  
cufflinks 0.034     Low  
cufflinks 0.114     Low High
cufflinks 0.007     Low  
cufflinks 0.014     Low  
cufflinks 0.054     Low High
cufflinks 0.011     Low  
cufflinks 0.027     Low  
cufflinks 0.01     Low  
cufflinks 0.013     Low  
cufflinks 0.014     Low  
cufflinks 0.006     Low  
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.011     Low  
cufflinks 0.001     Low Low

0 Strain