Gene : Seita.3G367100 S. italica v2.2
Defline:  (1 of 8) PF04788 - Protein of unknown function (DUF620) (DUF620) Genomic Order:  3671
Name:  ? Seita.3G367100 Secondary Identifier:  ? PAC:32713518
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G367100 0.5kb upstream 0.5kb upstream 3414 true scaffold_3: 47031238-47034651 Setaria italica
Seita.3G367100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47034152-47034651 Setaria italica
Seita.3G367100 0.5kb downstream 0.5kb downstream 3414 true scaffold_3: 47030738-47034151 Setaria italica
Seita.3G367100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47030738-47031237 Setaria italica
Seita.3G367100 1.0kb upstream 1.0kb upstream 3914 true scaffold_3: 47031238-47035151 Setaria italica
Seita.3G367100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47034152-47035151 Setaria italica
Seita.3G367100 1.0kb downstream 1.0kb downstream 3914 true scaffold_3: 47030238-47034151 Setaria italica
Seita.3G367100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47030238-47031237 Setaria italica
Seita.3G367100 2.0kb upstream 2.0kb upstream 4914 true scaffold_3: 47031238-47036151 Setaria italica
Seita.3G367100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47034152-47036151 Setaria italica
Seita.3G367100 2.0kb downstream 2.0kb downstream 4914 true scaffold_3: 47029238-47034151 Setaria italica
Seita.3G367100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47029238-47031237 Setaria italica
Seita.3G367100 5.0kb upstream 5.0kb upstream 7914 true scaffold_3: 47031238-47039151 Setaria italica
Seita.3G367100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47034152-47039151 Setaria italica
Seita.3G367100 5.0kb downstream 5.0kb downstream 7914 true scaffold_3: 47026238-47034151 Setaria italica
Seita.3G367100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47026238-47031237 Setaria italica
Seita.3G367100 10.0kb upstream 10.0kb upstream 12914 true scaffold_3: 47031238-47044151 Setaria italica
Seita.3G367100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47034152-47044151 Setaria italica
Seita.3G367100 10.0kb downstream 10.0kb downstream 12914 true scaffold_3: 47021238-47034151 Setaria italica
Seita.3G367100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47021238-47031237 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198287 5267 Panicoideae View MSA
124585099 5269 Grass View MSA
122043427 5273 Angiosperm View MSA
121310121 5274 Embryophyte View MSA
123347696 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.837        
cufflinks 14.564     High  
cufflinks 44.193     High High
cufflinks 38.195     High High
cufflinks 38.505     High High
cufflinks 15.018     High  
cufflinks 27.151     High  
cufflinks 22.678     High  
cufflinks 14.72     High  
cufflinks 11.095        
cufflinks 11.44        
cufflinks 4.713       Low
cufflinks 4.321       Low
cufflinks 17.011     High  
cufflinks 9.075        
cufflinks 20.413     High  
cufflinks 7.554       Low
cufflinks 12.015     High  
cufflinks 25.623     High  
cufflinks 9.03        

0 Strain