Gene : Seita.3G369000 S. italica v2.2
Defline:  (1 of 13) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  3690
Name:  ? Seita.3G369000 Secondary Identifier:  ? PAC:32709783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G369000 0.5kb upstream 0.5kb upstream 5169 true scaffold_3: 47204173-47209341 Setaria italica
Seita.3G369000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47208842-47209341 Setaria italica
Seita.3G369000 0.5kb downstream 0.5kb downstream 5169 true scaffold_3: 47203673-47208841 Setaria italica
Seita.3G369000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47203673-47204172 Setaria italica
Seita.3G369000 1.0kb upstream 1.0kb upstream 5669 true scaffold_3: 47204173-47209841 Setaria italica
Seita.3G369000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47208842-47209841 Setaria italica
Seita.3G369000 1.0kb downstream 1.0kb downstream 5669 true scaffold_3: 47203173-47208841 Setaria italica
Seita.3G369000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47203173-47204172 Setaria italica
Seita.3G369000 2.0kb upstream 2.0kb upstream 6669 true scaffold_3: 47204173-47210841 Setaria italica
Seita.3G369000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47208842-47210841 Setaria italica
Seita.3G369000 2.0kb downstream 2.0kb downstream 6669 true scaffold_3: 47202173-47208841 Setaria italica
Seita.3G369000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47202173-47204172 Setaria italica
Seita.3G369000 5.0kb upstream 5.0kb upstream 9669 true scaffold_3: 47204173-47213841 Setaria italica
Seita.3G369000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47208842-47213841 Setaria italica
Seita.3G369000 5.0kb downstream 5.0kb downstream 9669 true scaffold_3: 47199173-47208841 Setaria italica
Seita.3G369000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47199173-47204172 Setaria italica
Seita.3G369000 10.0kb upstream 10.0kb upstream 14669 true scaffold_3: 47204173-47218841 Setaria italica
Seita.3G369000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47208842-47218841 Setaria italica
Seita.3G369000 10.0kb downstream 10.0kb downstream 14669 true scaffold_3: 47194173-47208841 Setaria italica
Seita.3G369000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47194173-47204172 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181713 5267 Panicoideae View MSA
124585898 5269 Grass View MSA
122047329 5273 Angiosperm View MSA
121350883 5274 Embryophyte View MSA
123381921 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.072       High
cufflinks 21.943     High High
cufflinks 1.5        
cufflinks 1.015       Low
cufflinks 0.557       Low
cufflinks 18.673     High High
cufflinks 4.808        
cufflinks 2.007        
cufflinks 1.427        
cufflinks 4.661        
cufflinks 8.633        
cufflinks 3.537        
cufflinks 4.342        
cufflinks 0.827       Low
cufflinks 5.571        
cufflinks 2.782        
cufflinks 4.03        
cufflinks 1.139       Low
cufflinks 1.151        
cufflinks 5.817        

0 Strain