Gene : Seita.3G369300 S. italica v2.2
Defline:  (1 of 1) PTHR11119:SF29 - NUCLEOBASE-ASCORBATE TRANSPORTER 3 Genomic Order:  3693
Name:  ? Seita.3G369300 Secondary Identifier:  ? PAC:32710192
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G369300 0.5kb upstream 0.5kb upstream 6534 true scaffold_3: 47225024-47231557 Setaria italica
Seita.3G369300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47225024-47225523 Setaria italica
Seita.3G369300 0.5kb downstream 0.5kb downstream 6534 true scaffold_3: 47225524-47232057 Setaria italica
Seita.3G369300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47231558-47232057 Setaria italica
Seita.3G369300 1.0kb upstream 1.0kb upstream 7034 true scaffold_3: 47224524-47231557 Setaria italica
Seita.3G369300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47224524-47225523 Setaria italica
Seita.3G369300 1.0kb downstream 1.0kb downstream 7034 true scaffold_3: 47225524-47232557 Setaria italica
Seita.3G369300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47231558-47232557 Setaria italica
Seita.3G369300 2.0kb upstream 2.0kb upstream 8034 true scaffold_3: 47223524-47231557 Setaria italica
Seita.3G369300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47223524-47225523 Setaria italica
Seita.3G369300 2.0kb downstream 2.0kb downstream 8034 true scaffold_3: 47225524-47233557 Setaria italica
Seita.3G369300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47231558-47233557 Setaria italica
Seita.3G369300 5.0kb upstream 5.0kb upstream 11034 true scaffold_3: 47220524-47231557 Setaria italica
Seita.3G369300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47220524-47225523 Setaria italica
Seita.3G369300 5.0kb downstream 5.0kb downstream 11034 true scaffold_3: 47225524-47236557 Setaria italica
Seita.3G369300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47231558-47236557 Setaria italica
Seita.3G369300 10.0kb upstream 10.0kb upstream 16034 true scaffold_3: 47215524-47231557 Setaria italica
Seita.3G369300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47215524-47225523 Setaria italica
Seita.3G369300 10.0kb downstream 10.0kb downstream 16034 true scaffold_3: 47225524-47241557 Setaria italica
Seita.3G369300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47231558-47241557 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191462 5267 Panicoideae View MSA
124568691 5269 Grass View MSA
122048256 5273 Angiosperm View MSA
121352133 5274 Embryophyte View MSA
123428829 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.325     High  
cufflinks 23.811     High  
cufflinks 13.347     High  
cufflinks 16.82     High  
cufflinks 19.746     High  
cufflinks 25.069     High High
cufflinks 25.574     High High
cufflinks 19.156     High  
cufflinks 23.153     High  
cufflinks 14.642        
cufflinks 17.474     High  
cufflinks 15.922     High  
cufflinks 13.022       Low
cufflinks 12.733       Low
cufflinks 16.809     High  
cufflinks 24.595     High  
cufflinks 14.315     High  
cufflinks 36.809     High High
cufflinks 8.879       Low
cufflinks 17.091     High  

0 Strain