Gene : Seita.3G370100 S. italica v2.2
Defline:  (1 of 1) PTHR13391 - TUBULIN-RELATED PROTEIN Genomic Order:  3701
Name:  ? Seita.3G370100 Secondary Identifier:  ? PAC:32712002
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G370100 0.5kb upstream 0.5kb upstream 5241 true scaffold_3: 47406260-47411500 Setaria italica
Seita.3G370100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47406260-47406759 Setaria italica
Seita.3G370100 0.5kb downstream 0.5kb downstream 5241 true scaffold_3: 47406760-47412000 Setaria italica
Seita.3G370100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47411501-47412000 Setaria italica
Seita.3G370100 1.0kb upstream 1.0kb upstream 5741 true scaffold_3: 47405760-47411500 Setaria italica
Seita.3G370100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47405760-47406759 Setaria italica
Seita.3G370100 1.0kb downstream 1.0kb downstream 5741 true scaffold_3: 47406760-47412500 Setaria italica
Seita.3G370100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47411501-47412500 Setaria italica
Seita.3G370100 2.0kb upstream 2.0kb upstream 6741 true scaffold_3: 47404760-47411500 Setaria italica
Seita.3G370100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47404760-47406759 Setaria italica
Seita.3G370100 2.0kb downstream 2.0kb downstream 6741 true scaffold_3: 47406760-47413500 Setaria italica
Seita.3G370100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47411501-47413500 Setaria italica
Seita.3G370100 5.0kb upstream 5.0kb upstream 9741 true scaffold_3: 47401760-47411500 Setaria italica
Seita.3G370100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47401760-47406759 Setaria italica
Seita.3G370100 5.0kb downstream 5.0kb downstream 9741 true scaffold_3: 47406760-47416500 Setaria italica
Seita.3G370100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47411501-47416500 Setaria italica
Seita.3G370100 10.0kb upstream 10.0kb upstream 14741 true scaffold_3: 47396760-47411500 Setaria italica
Seita.3G370100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47396760-47406759 Setaria italica
Seita.3G370100 10.0kb downstream 10.0kb downstream 14741 true scaffold_3: 47406760-47421500 Setaria italica
Seita.3G370100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47411501-47421500 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178260 5267 Panicoideae View MSA
124581272 5269 Grass View MSA
122047686 5273 Angiosperm View MSA
121346251 5274 Embryophyte View MSA
123424627 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.306       High
cufflinks 3.795        
cufflinks 3.175        
cufflinks 2.453       Low
cufflinks 2.87        
cufflinks 3.703        
cufflinks 3.169        
cufflinks 2.375       Low
cufflinks 3.301        
cufflinks 3.139        
cufflinks 3.442        
cufflinks 3.116        
cufflinks 3.264        
cufflinks 3.014        
cufflinks 3.095        
cufflinks 4.112       High
cufflinks 3.652        
cufflinks 5.761       High
cufflinks 1.829       Low
cufflinks 2.507       Low

0 Strain