Gene : Seita.3G374000 S. italica v2.2
Genomic Order:  3740 Name:  ? Seita.3G374000
Secondary Identifier:  ? PAC:32711954
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G374000 0.5kb upstream 0.5kb upstream 1547 true scaffold_3: 47755519-47757065 Setaria italica
Seita.3G374000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47755519-47756018 Setaria italica
Seita.3G374000 0.5kb downstream 0.5kb downstream 1547 true scaffold_3: 47756019-47757565 Setaria italica
Seita.3G374000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47757066-47757565 Setaria italica
Seita.3G374000 1.0kb upstream 1.0kb upstream 2047 true scaffold_3: 47755019-47757065 Setaria italica
Seita.3G374000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47755019-47756018 Setaria italica
Seita.3G374000 1.0kb downstream 1.0kb downstream 2047 true scaffold_3: 47756019-47758065 Setaria italica
Seita.3G374000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47757066-47758065 Setaria italica
Seita.3G374000 2.0kb upstream 2.0kb upstream 3047 true scaffold_3: 47754019-47757065 Setaria italica
Seita.3G374000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47754019-47756018 Setaria italica
Seita.3G374000 2.0kb downstream 2.0kb downstream 3047 true scaffold_3: 47756019-47759065 Setaria italica
Seita.3G374000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47757066-47759065 Setaria italica
Seita.3G374000 5.0kb upstream 5.0kb upstream 6047 true scaffold_3: 47751019-47757065 Setaria italica
Seita.3G374000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47751019-47756018 Setaria italica
Seita.3G374000 5.0kb downstream 5.0kb downstream 6047 true scaffold_3: 47756019-47762065 Setaria italica
Seita.3G374000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47757066-47762065 Setaria italica
Seita.3G374000 10.0kb upstream 10.0kb upstream 11047 true scaffold_3: 47746019-47757065 Setaria italica
Seita.3G374000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47746019-47756018 Setaria italica
Seita.3G374000 10.0kb downstream 10.0kb downstream 11047 true scaffold_3: 47756019-47767065 Setaria italica
Seita.3G374000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47757066-47767065 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181985 5267 Panicoideae View MSA
124586282 5269 Grass View MSA
122050184 5273 Angiosperm View MSA
121311784 5274 Embryophyte View MSA
123349033 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.267        
cufflinks 0.306        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.469        
cufflinks 0.117        
cufflinks 0.325        
cufflinks 0.04     Low Low
cufflinks 7.486       High
cufflinks 2.725        
cufflinks 4.05        
cufflinks 3.013        
cufflinks 0.029     Low Low
cufflinks 4.836       High
cufflinks 0.195        
cufflinks 6.303       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low Low
cufflinks 2.532        

0 Strain