Gene : Seita.3G375600 S. italica v2.2
Defline:  (1 of 1) 2.7.1.130 - Tetraacyldisaccharide 4'-kinase / Lipid-A 4'-kinase Genomic Order:  3756
Name:  ? Seita.3G375600 Secondary Identifier:  ? PAC:32713849
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica NAGLIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G375600 0.5kb upstream 0.5kb upstream 3555 true scaffold_3: 47828927-47832481 Setaria italica
Seita.3G375600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47828927-47829426 Setaria italica
Seita.3G375600 0.5kb downstream 0.5kb downstream 3555 true scaffold_3: 47829427-47832981 Setaria italica
Seita.3G375600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47832482-47832981 Setaria italica
Seita.3G375600 1.0kb upstream 1.0kb upstream 4055 true scaffold_3: 47828427-47832481 Setaria italica
Seita.3G375600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47828427-47829426 Setaria italica
Seita.3G375600 1.0kb downstream 1.0kb downstream 4055 true scaffold_3: 47829427-47833481 Setaria italica
Seita.3G375600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47832482-47833481 Setaria italica
Seita.3G375600 2.0kb upstream 2.0kb upstream 5055 true scaffold_3: 47827427-47832481 Setaria italica
Seita.3G375600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47827427-47829426 Setaria italica
Seita.3G375600 2.0kb downstream 2.0kb downstream 5055 true scaffold_3: 47829427-47834481 Setaria italica
Seita.3G375600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47832482-47834481 Setaria italica
Seita.3G375600 5.0kb upstream 5.0kb upstream 8055 true scaffold_3: 47824427-47832481 Setaria italica
Seita.3G375600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47824427-47829426 Setaria italica
Seita.3G375600 5.0kb downstream 5.0kb downstream 8055 true scaffold_3: 47829427-47837481 Setaria italica
Seita.3G375600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47832482-47837481 Setaria italica
Seita.3G375600 10.0kb upstream 10.0kb upstream 13055 true scaffold_3: 47819427-47832481 Setaria italica
Seita.3G375600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47819427-47829426 Setaria italica
Seita.3G375600 10.0kb downstream 10.0kb downstream 13055 true scaffold_3: 47829427-47842481 Setaria italica
Seita.3G375600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47832482-47842481 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040908 5273 Angiosperm View MSA
122180140 5267 Panicoideae View MSA
124581780 5269 Grass View MSA
121346697 5274 Embryophyte View MSA
123380430 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.587       High
cufflinks 0.35        
cufflinks 0.121       Low
cufflinks 0.123       Low
cufflinks 0.171       Low
cufflinks 0.354        
cufflinks 0.434        
cufflinks 0.385        
cufflinks 0.472        
cufflinks 0.498        
cufflinks 0.43        
cufflinks 0.399        
cufflinks 0.394        
cufflinks 0.154       Low
cufflinks 0.315        
cufflinks 0.692       High
cufflinks 0.501        
cufflinks 0.455        
cufflinks 0.178       Low
cufflinks 0.366        

0 Strain