Gene : Seita.3G375100 S. italica v2.2
Defline:  (1 of 1) 4.1.1.20 - Diaminopimelate decarboxylase / Meso-2,6-diaminoheptanedioate carboxy-lyase Genomic Order:  3751
Name:  ? Seita.3G375100 Secondary Identifier:  ? PAC:32713674
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5097 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G375100 0.5kb upstream 0.5kb upstream 5227 true scaffold_3: 47803080-47808306 Setaria italica
Seita.3G375100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 47807807-47808306 Setaria italica
Seita.3G375100 0.5kb downstream 0.5kb downstream 5227 true scaffold_3: 47802580-47807806 Setaria italica
Seita.3G375100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 47802580-47803079 Setaria italica
Seita.3G375100 1.0kb upstream 1.0kb upstream 5727 true scaffold_3: 47803080-47808806 Setaria italica
Seita.3G375100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 47807807-47808806 Setaria italica
Seita.3G375100 1.0kb downstream 1.0kb downstream 5727 true scaffold_3: 47802080-47807806 Setaria italica
Seita.3G375100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 47802080-47803079 Setaria italica
Seita.3G375100 2.0kb upstream 2.0kb upstream 6727 true scaffold_3: 47803080-47809806 Setaria italica
Seita.3G375100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 47807807-47809806 Setaria italica
Seita.3G375100 2.0kb downstream 2.0kb downstream 6727 true scaffold_3: 47801080-47807806 Setaria italica
Seita.3G375100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 47801080-47803079 Setaria italica
Seita.3G375100 5.0kb upstream 5.0kb upstream 9727 true scaffold_3: 47803080-47812806 Setaria italica
Seita.3G375100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 47807807-47812806 Setaria italica
Seita.3G375100 5.0kb downstream 5.0kb downstream 9727 true scaffold_3: 47798080-47807806 Setaria italica
Seita.3G375100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 47798080-47803079 Setaria italica
Seita.3G375100 10.0kb upstream 10.0kb upstream 14727 true scaffold_3: 47803080-47817806 Setaria italica
Seita.3G375100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 47807807-47817806 Setaria italica
Seita.3G375100 10.0kb downstream 10.0kb downstream 14727 true scaffold_3: 47793080-47807806 Setaria italica
Seita.3G375100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 47793080-47803079 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193306 5267 Panicoideae View MSA
124571113 5269 Grass View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.586     High  
cufflinks 20.893     High  
cufflinks 9.618       Low
cufflinks 7.335       Low
cufflinks 14.249     High  
cufflinks 19.25     High  
cufflinks 27.949     High High
cufflinks 37.092     High High
cufflinks 52.246     High High
cufflinks 16.655     High  
cufflinks 17.651     High  
cufflinks 17.499     High  
cufflinks 12.312        
cufflinks 13.329        
cufflinks 17.256     High  
cufflinks 12.746     High  
cufflinks 20.835     High  
cufflinks 11.114        
cufflinks 9.346       Low
cufflinks 21.791     High  

0 Strain