Gene : Seita.3G381600 S. italica v2.2
Defline:  (1 of 2) PTHR24362:SF218 - SERINE/THREONINE-PROTEIN KINASE NEK4 Genomic Order:  3816
Name:  ? Seita.3G381600 Secondary Identifier:  ? PAC:32710463
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G381600 0.5kb upstream 0.5kb upstream 5691 true scaffold_3: 48381582-48387272 Setaria italica
Seita.3G381600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 48381582-48382081 Setaria italica
Seita.3G381600 0.5kb downstream 0.5kb downstream 5691 true scaffold_3: 48382082-48387772 Setaria italica
Seita.3G381600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 48387273-48387772 Setaria italica
Seita.3G381600 1.0kb upstream 1.0kb upstream 6191 true scaffold_3: 48381082-48387272 Setaria italica
Seita.3G381600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 48381082-48382081 Setaria italica
Seita.3G381600 1.0kb downstream 1.0kb downstream 6191 true scaffold_3: 48382082-48388272 Setaria italica
Seita.3G381600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 48387273-48388272 Setaria italica
Seita.3G381600 2.0kb upstream 2.0kb upstream 7191 true scaffold_3: 48380082-48387272 Setaria italica
Seita.3G381600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 48380082-48382081 Setaria italica
Seita.3G381600 2.0kb downstream 2.0kb downstream 7191 true scaffold_3: 48382082-48389272 Setaria italica
Seita.3G381600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 48387273-48389272 Setaria italica
Seita.3G381600 5.0kb upstream 5.0kb upstream 10191 true scaffold_3: 48377082-48387272 Setaria italica
Seita.3G381600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 48377082-48382081 Setaria italica
Seita.3G381600 5.0kb downstream 5.0kb downstream 10191 true scaffold_3: 48382082-48392272 Setaria italica
Seita.3G381600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 48387273-48392272 Setaria italica
Seita.3G381600 10.0kb upstream 10.0kb upstream 15191 true scaffold_3: 48372082-48387272 Setaria italica
Seita.3G381600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 48372082-48382081 Setaria italica
Seita.3G381600 10.0kb downstream 10.0kb downstream 15191 true scaffold_3: 48382082-48397272 Setaria italica
Seita.3G381600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 48387273-48397272 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191632 5267 Panicoideae View MSA
124589477 5269 Grass View MSA
122043022 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121310065 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.783        
cufflinks 4.717       High
cufflinks 0.098       Low
cufflinks 0.16       Low
cufflinks 0.429        
cufflinks 5.629       High
cufflinks 3.013        
cufflinks 3.278        
cufflinks 2.718        
cufflinks 3.51        
cufflinks 4.504       High
cufflinks 0.975        
cufflinks 0.951        
cufflinks 0.115     Low Low
cufflinks 2.365        
cufflinks 1.167        
cufflinks 1.638        
cufflinks 0.76        
cufflinks 0.106       Low
cufflinks 1.777        

0 Strain