Gene : Seita.3G381700 S. italica v2.2
Defline:  (1 of 1) PTHR11649:SF64 - PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 1 Genomic Order:  3817
Name:  ? Seita.3G381700 Secondary Identifier:  ? PAC:32711154
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G381700 0.5kb upstream 0.5kb upstream 14091 true scaffold_3: 48387874-48401964 Setaria italica
Seita.3G381700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 48401465-48401964 Setaria italica
Seita.3G381700 0.5kb downstream 0.5kb downstream 14091 true scaffold_3: 48387374-48401464 Setaria italica
Seita.3G381700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 48387374-48387873 Setaria italica
Seita.3G381700 1.0kb upstream 1.0kb upstream 14591 true scaffold_3: 48387874-48402464 Setaria italica
Seita.3G381700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 48401465-48402464 Setaria italica
Seita.3G381700 1.0kb downstream 1.0kb downstream 14591 true scaffold_3: 48386874-48401464 Setaria italica
Seita.3G381700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 48386874-48387873 Setaria italica
Seita.3G381700 2.0kb upstream 2.0kb upstream 15591 true scaffold_3: 48387874-48403464 Setaria italica
Seita.3G381700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 48401465-48403464 Setaria italica
Seita.3G381700 2.0kb downstream 2.0kb downstream 15591 true scaffold_3: 48385874-48401464 Setaria italica
Seita.3G381700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 48385874-48387873 Setaria italica
Seita.3G381700 5.0kb upstream 5.0kb upstream 18591 true scaffold_3: 48387874-48406464 Setaria italica
Seita.3G381700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 48401465-48406464 Setaria italica
Seita.3G381700 5.0kb downstream 5.0kb downstream 18591 true scaffold_3: 48382874-48401464 Setaria italica
Seita.3G381700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 48382874-48387873 Setaria italica
Seita.3G381700 10.0kb upstream 10.0kb upstream 23591 true scaffold_3: 48387874-48411464 Setaria italica
Seita.3G381700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 48401465-48411464 Setaria italica
Seita.3G381700 10.0kb downstream 10.0kb downstream 23591 true scaffold_3: 48377874-48401464 Setaria italica
Seita.3G381700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 48377874-48387873 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188945 5267 Panicoideae View MSA
124580491 5269 Grass View MSA
122048345 5273 Angiosperm View MSA
121345089 5274 Embryophyte View MSA
123427050 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.028     Low  
cufflinks 0.097     Low High
cufflinks 0.007     Low  
cufflinks 0.002     Low Low
cufflinks 0.004     Low Low
cufflinks 0.116     Low High
cufflinks 0.015     Low  
cufflinks 0.021     Low  
cufflinks 0.029     Low  
cufflinks 0.008     Low  
cufflinks 0.047     Low  
cufflinks 0.027     Low  
cufflinks 0.039     Low  
cufflinks 0.006     Low  
cufflinks 0.055     Low  
cufflinks 0.006     Low  
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.048     Low  

0 Strain