Gene : Seita.4G055800 S. italica v2.2
Defline:  (1 of 1) 4.4.1.8 - Cystathionine beta-lyase / Cystine lyase Genomic Order:  558
Name:  ? Seita.4G055800 Secondary Identifier:  ? PAC:32708608
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6936 Setaria italica pathologic  
Sitalica PWY-702 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G055800 0.5kb upstream 0.5kb upstream 4125 true scaffold_4: 4101871-4105995 Setaria italica
Seita.4G055800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 4105496-4105995 Setaria italica
Seita.4G055800 0.5kb downstream 0.5kb downstream 4125 true scaffold_4: 4101371-4105495 Setaria italica
Seita.4G055800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 4101371-4101870 Setaria italica
Seita.4G055800 1.0kb upstream 1.0kb upstream 4625 true scaffold_4: 4101871-4106495 Setaria italica
Seita.4G055800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 4105496-4106495 Setaria italica
Seita.4G055800 1.0kb downstream 1.0kb downstream 4625 true scaffold_4: 4100871-4105495 Setaria italica
Seita.4G055800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 4100871-4101870 Setaria italica
Seita.4G055800 2.0kb upstream 2.0kb upstream 5625 true scaffold_4: 4101871-4107495 Setaria italica
Seita.4G055800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 4105496-4107495 Setaria italica
Seita.4G055800 2.0kb downstream 2.0kb downstream 5625 true scaffold_4: 4099871-4105495 Setaria italica
Seita.4G055800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 4099871-4101870 Setaria italica
Seita.4G055800 5.0kb upstream 5.0kb upstream 8625 true scaffold_4: 4101871-4110495 Setaria italica
Seita.4G055800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 4105496-4110495 Setaria italica
Seita.4G055800 5.0kb downstream 5.0kb downstream 8625 true scaffold_4: 4096871-4105495 Setaria italica
Seita.4G055800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 4096871-4101870 Setaria italica
Seita.4G055800 10.0kb upstream 10.0kb upstream 13625 true scaffold_4: 4101871-4115495 Setaria italica
Seita.4G055800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 4105496-4115495 Setaria italica
Seita.4G055800 10.0kb downstream 10.0kb downstream 13625 true scaffold_4: 4091871-4105495 Setaria italica
Seita.4G055800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 4091871-4101870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041211 5273 Angiosperm View MSA
122176526 5267 Panicoideae View MSA
124572308 5269 Grass View MSA
121349443 5274 Embryophyte View MSA
123424610 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.398        
cufflinks 8.252        
cufflinks 5.06        
cufflinks 5.072        
cufflinks 6.591        
cufflinks 6.884        
cufflinks 10.869       High
cufflinks 8.61       High
cufflinks 9.045       High
cufflinks 7.218        
cufflinks 6.532        
cufflinks 4.991        
cufflinks 6.768        
cufflinks 5.333        
cufflinks 7.833        
cufflinks 4.763        
cufflinks 6.545        
cufflinks 2.763       Low
cufflinks 5.124        
cufflinks 6.567        

0 Strain