Gene : Seita.4G061700 S. italica v2.2
Defline:  (1 of 1) PTHR10782:SF4 - SUPPRESSOR OF VARIEGATION 2-10, ISOFORM I Genomic Order:  617
Name:  ? Seita.4G061700 Secondary Identifier:  ? PAC:32706802
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G061700 0.5kb upstream 0.5kb upstream 10556 true scaffold_4: 4575854-4586409 Setaria italica
Seita.4G061700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 4575854-4576353 Setaria italica
Seita.4G061700 0.5kb downstream 0.5kb downstream 10556 true scaffold_4: 4576354-4586909 Setaria italica
Seita.4G061700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 4586410-4586909 Setaria italica
Seita.4G061700 1.0kb upstream 1.0kb upstream 11056 true scaffold_4: 4575354-4586409 Setaria italica
Seita.4G061700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 4575354-4576353 Setaria italica
Seita.4G061700 1.0kb downstream 1.0kb downstream 11056 true scaffold_4: 4576354-4587409 Setaria italica
Seita.4G061700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 4586410-4587409 Setaria italica
Seita.4G061700 2.0kb upstream 2.0kb upstream 12056 true scaffold_4: 4574354-4586409 Setaria italica
Seita.4G061700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 4574354-4576353 Setaria italica
Seita.4G061700 2.0kb downstream 2.0kb downstream 12056 true scaffold_4: 4576354-4588409 Setaria italica
Seita.4G061700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 4586410-4588409 Setaria italica
Seita.4G061700 5.0kb upstream 5.0kb upstream 15056 true scaffold_4: 4571354-4586409 Setaria italica
Seita.4G061700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 4571354-4576353 Setaria italica
Seita.4G061700 5.0kb downstream 5.0kb downstream 15056 true scaffold_4: 4576354-4591409 Setaria italica
Seita.4G061700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 4586410-4591409 Setaria italica
Seita.4G061700 10.0kb upstream 10.0kb upstream 20056 true scaffold_4: 4566354-4586409 Setaria italica
Seita.4G061700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 4566354-4576353 Setaria italica
Seita.4G061700 10.0kb downstream 10.0kb downstream 20056 true scaffold_4: 4576354-4596409 Setaria italica
Seita.4G061700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 4586410-4596409 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184726 5267 Panicoideae View MSA
124571498 5269 Grass View MSA
122050924 5273 Angiosperm View MSA
121346660 5274 Embryophyte View MSA
123426833 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.893        
cufflinks 3.712       High
cufflinks 2.072        
cufflinks 1.703       Low
cufflinks 1.684       Low
cufflinks 3.477       High
cufflinks 3.16        
cufflinks 1.825        
cufflinks 1.714       Low
cufflinks 2.587        
cufflinks 2.729        
cufflinks 2.455        
cufflinks 2.312        
cufflinks 1.734       Low
cufflinks 2.649        
cufflinks 3.415       High
cufflinks 2.037        
cufflinks 3.353       High
cufflinks 1.578       Low
cufflinks 2.542        

0 Strain