Gene : Seita.4G066800 S. italica v2.2
Defline:  (1 of 1) PTHR12416:SF2 - RRNA-PROCESSING PROTEIN FCF1 HOMOLOG Genomic Order:  668
Name:  ? Seita.4G066800 Secondary Identifier:  ? PAC:32707885
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G066800 0.5kb upstream 0.5kb upstream 3936 true scaffold_4: 5107804-5111739 Setaria italica
Seita.4G066800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5107804-5108303 Setaria italica
Seita.4G066800 0.5kb downstream 0.5kb downstream 3936 true scaffold_4: 5108304-5112239 Setaria italica
Seita.4G066800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5111740-5112239 Setaria italica
Seita.4G066800 1.0kb upstream 1.0kb upstream 4436 true scaffold_4: 5107304-5111739 Setaria italica
Seita.4G066800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5107304-5108303 Setaria italica
Seita.4G066800 1.0kb downstream 1.0kb downstream 4436 true scaffold_4: 5108304-5112739 Setaria italica
Seita.4G066800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5111740-5112739 Setaria italica
Seita.4G066800 2.0kb upstream 2.0kb upstream 5436 true scaffold_4: 5106304-5111739 Setaria italica
Seita.4G066800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5106304-5108303 Setaria italica
Seita.4G066800 2.0kb downstream 2.0kb downstream 5436 true scaffold_4: 5108304-5113739 Setaria italica
Seita.4G066800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5111740-5113739 Setaria italica
Seita.4G066800 5.0kb upstream 5.0kb upstream 8436 true scaffold_4: 5103304-5111739 Setaria italica
Seita.4G066800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5103304-5108303 Setaria italica
Seita.4G066800 5.0kb downstream 5.0kb downstream 8436 true scaffold_4: 5108304-5116739 Setaria italica
Seita.4G066800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5111740-5116739 Setaria italica
Seita.4G066800 10.0kb upstream 10.0kb upstream 13436 true scaffold_4: 5098304-5111739 Setaria italica
Seita.4G066800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5098304-5108303 Setaria italica
Seita.4G066800 10.0kb downstream 10.0kb downstream 13436 true scaffold_4: 5108304-5121739 Setaria italica
Seita.4G066800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5111740-5121739 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199811 5267 Panicoideae View MSA
124573088 5269 Grass View MSA
122042240 5273 Angiosperm View MSA
121350234 5274 Embryophyte View MSA
123426184 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.891        
cufflinks 5.682        
cufflinks 2.087       Low
cufflinks 2.031       Low
cufflinks 2.331       Low
cufflinks 7.24       High
cufflinks 3.546        
cufflinks 5.783        
cufflinks 5.612        
cufflinks 8.291       High
cufflinks 4.704        
cufflinks 6.012        
cufflinks 5.05        
cufflinks 3.386        
cufflinks 5.668        
cufflinks 3.049        
cufflinks 8.089       High
cufflinks 4.171        
cufflinks 2.393       Low
cufflinks 6.757        

0 Strain