Gene : Seita.4G072300 S. italica v2.2
Defline:  (1 of 1) PTHR13697:SF7 - 6-PHOSPHOFRUCTOKINASE 1-RELATED Genomic Order:  723
Name:  ? Seita.4G072300 Secondary Identifier:  ? PAC:32708185
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica PWY-1042 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G072300 0.5kb upstream 0.5kb upstream 4869 true scaffold_4: 5573557-5578425 Setaria italica
Seita.4G072300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5573557-5574056 Setaria italica
Seita.4G072300 0.5kb downstream 0.5kb downstream 4869 true scaffold_4: 5574057-5578925 Setaria italica
Seita.4G072300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5578426-5578925 Setaria italica
Seita.4G072300 1.0kb upstream 1.0kb upstream 5369 true scaffold_4: 5573057-5578425 Setaria italica
Seita.4G072300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5573057-5574056 Setaria italica
Seita.4G072300 1.0kb downstream 1.0kb downstream 5369 true scaffold_4: 5574057-5579425 Setaria italica
Seita.4G072300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5578426-5579425 Setaria italica
Seita.4G072300 2.0kb upstream 2.0kb upstream 6369 true scaffold_4: 5572057-5578425 Setaria italica
Seita.4G072300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5572057-5574056 Setaria italica
Seita.4G072300 2.0kb downstream 2.0kb downstream 6369 true scaffold_4: 5574057-5580425 Setaria italica
Seita.4G072300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5578426-5580425 Setaria italica
Seita.4G072300 5.0kb upstream 5.0kb upstream 9369 true scaffold_4: 5569057-5578425 Setaria italica
Seita.4G072300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5569057-5574056 Setaria italica
Seita.4G072300 5.0kb downstream 5.0kb downstream 9369 true scaffold_4: 5574057-5583425 Setaria italica
Seita.4G072300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5578426-5583425 Setaria italica
Seita.4G072300 10.0kb upstream 10.0kb upstream 14369 true scaffold_4: 5564057-5578425 Setaria italica
Seita.4G072300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5564057-5574056 Setaria italica
Seita.4G072300 10.0kb downstream 10.0kb downstream 14369 true scaffold_4: 5574057-5588425 Setaria italica
Seita.4G072300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5578426-5588425 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041124 5273 Angiosperm View MSA
122187432 5267 Panicoideae View MSA
124574509 5269 Grass View MSA
121349898 5274 Embryophyte View MSA
123428795 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.537        
cufflinks 16.42     High  
cufflinks 14.717     High  
cufflinks 11.039     High  
cufflinks 8.952        
cufflinks 14.889     High  
cufflinks 12.546        
cufflinks 12.436        
cufflinks 7.616       Low
cufflinks 8.424        
cufflinks 10.444        
cufflinks 14.805     High  
cufflinks 13.695     High  
cufflinks 17.019     High  
cufflinks 17.835     High  
cufflinks 10.129        
cufflinks 19.976     High High
cufflinks 3.437       Low
cufflinks 16.747     High  
cufflinks 18.867     High High

0 Strain