Gene : Seita.4G072500 S. italica v2.2
Defline:  (1 of 1) PTHR23249:SF15 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4 Genomic Order:  725
Name:  ? Seita.4G072500 Secondary Identifier:  ? PAC:32708584
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G072500 0.5kb upstream 0.5kb upstream 3071 true scaffold_4: 5589306-5592376 Setaria italica
Seita.4G072500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5589306-5589805 Setaria italica
Seita.4G072500 0.5kb downstream 0.5kb downstream 3071 true scaffold_4: 5589806-5592876 Setaria italica
Seita.4G072500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5592377-5592876 Setaria italica
Seita.4G072500 1.0kb upstream 1.0kb upstream 3571 true scaffold_4: 5588806-5592376 Setaria italica
Seita.4G072500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5588806-5589805 Setaria italica
Seita.4G072500 1.0kb downstream 1.0kb downstream 3571 true scaffold_4: 5589806-5593376 Setaria italica
Seita.4G072500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5592377-5593376 Setaria italica
Seita.4G072500 2.0kb upstream 2.0kb upstream 4571 true scaffold_4: 5587806-5592376 Setaria italica
Seita.4G072500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5587806-5589805 Setaria italica
Seita.4G072500 2.0kb downstream 2.0kb downstream 4571 true scaffold_4: 5589806-5594376 Setaria italica
Seita.4G072500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5592377-5594376 Setaria italica
Seita.4G072500 5.0kb upstream 5.0kb upstream 7571 true scaffold_4: 5584806-5592376 Setaria italica
Seita.4G072500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5584806-5589805 Setaria italica
Seita.4G072500 5.0kb downstream 5.0kb downstream 7571 true scaffold_4: 5589806-5597376 Setaria italica
Seita.4G072500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5592377-5597376 Setaria italica
Seita.4G072500 10.0kb upstream 10.0kb upstream 12571 true scaffold_4: 5579806-5592376 Setaria italica
Seita.4G072500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5579806-5589805 Setaria italica
Seita.4G072500 10.0kb downstream 10.0kb downstream 12571 true scaffold_4: 5589806-5602376 Setaria italica
Seita.4G072500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5592377-5602376 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189863 5267 Panicoideae View MSA
124587938 5269 Grass View MSA
122043161 5273 Angiosperm View MSA
121347078 5274 Embryophyte View MSA
123424121 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.667        
cufflinks 7.751        
cufflinks 4.711       Low
cufflinks 4.241       Low
cufflinks 4.095       Low
cufflinks 8.877        
cufflinks 5.421        
cufflinks 9.295        
cufflinks 4.973        
cufflinks 13.443       High
cufflinks 6.888        
cufflinks 9.833        
cufflinks 8.655        
cufflinks 6.333        
cufflinks 9.485        
cufflinks 4.798       Low
cufflinks 11.204       High
cufflinks 4.614       Low
cufflinks 5.571        
cufflinks 10.353       High

0 Strain