Gene : Seita.4G077300 S. italica v2.2
Defline:  (1 of 1) PTHR13104 - MED-6-RELATED Genomic Order:  773
Name:  ? Seita.4G077300 Secondary Identifier:  ? PAC:32706341
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G077300 0.5kb upstream 0.5kb upstream 6285 true scaffold_4: 6005623-6011907 Setaria italica
Seita.4G077300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 6011408-6011907 Setaria italica
Seita.4G077300 0.5kb downstream 0.5kb downstream 6285 true scaffold_4: 6005123-6011407 Setaria italica
Seita.4G077300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 6005123-6005622 Setaria italica
Seita.4G077300 1.0kb upstream 1.0kb upstream 6785 true scaffold_4: 6005623-6012407 Setaria italica
Seita.4G077300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 6011408-6012407 Setaria italica
Seita.4G077300 1.0kb downstream 1.0kb downstream 6785 true scaffold_4: 6004623-6011407 Setaria italica
Seita.4G077300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 6004623-6005622 Setaria italica
Seita.4G077300 2.0kb upstream 2.0kb upstream 7785 true scaffold_4: 6005623-6013407 Setaria italica
Seita.4G077300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 6011408-6013407 Setaria italica
Seita.4G077300 2.0kb downstream 2.0kb downstream 7785 true scaffold_4: 6003623-6011407 Setaria italica
Seita.4G077300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 6003623-6005622 Setaria italica
Seita.4G077300 5.0kb upstream 5.0kb upstream 10785 true scaffold_4: 6005623-6016407 Setaria italica
Seita.4G077300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 6011408-6016407 Setaria italica
Seita.4G077300 5.0kb downstream 5.0kb downstream 10785 true scaffold_4: 6000623-6011407 Setaria italica
Seita.4G077300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 6000623-6005622 Setaria italica
Seita.4G077300 10.0kb upstream 10.0kb upstream 15785 true scaffold_4: 6005623-6021407 Setaria italica
Seita.4G077300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 6011408-6021407 Setaria italica
Seita.4G077300 10.0kb downstream 10.0kb downstream 15785 true scaffold_4: 5995623-6011407 Setaria italica
Seita.4G077300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5995623-6005622 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196619 5267 Panicoideae View MSA
124573117 5269 Grass View MSA
122048865 5273 Angiosperm View MSA
121348373 5274 Embryophyte View MSA
123425020 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.58        
cufflinks 4.783        
cufflinks 2.816       Low
cufflinks 2.71       Low
cufflinks 2.206       Low
cufflinks 5.261        
cufflinks 3.722        
cufflinks 5.215        
cufflinks 2.854       Low
cufflinks 8.689       High
cufflinks 4.314        
cufflinks 5.353        
cufflinks 4.339        
cufflinks 3.359        
cufflinks 5.134        
cufflinks 4.131        
cufflinks 6.462       High
cufflinks 5.93        
cufflinks 3.045       Low
cufflinks 5.2        

0 Strain