Gene : Seita.4G077100 S. italica v2.2
Defline:  (1 of 1) PTHR11071//PTHR11071:SF279 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Genomic Order:  771
Name:  ? Seita.4G077100 Secondary Identifier:  ? PAC:32708022
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G077100 0.5kb upstream 0.5kb upstream 6249 true scaffold_4: 5958940-5965188 Setaria italica
Seita.4G077100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5964689-5965188 Setaria italica
Seita.4G077100 0.5kb downstream 0.5kb downstream 6249 true scaffold_4: 5958440-5964688 Setaria italica
Seita.4G077100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5958440-5958939 Setaria italica
Seita.4G077100 1.0kb upstream 1.0kb upstream 6749 true scaffold_4: 5958940-5965688 Setaria italica
Seita.4G077100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5964689-5965688 Setaria italica
Seita.4G077100 1.0kb downstream 1.0kb downstream 6749 true scaffold_4: 5957940-5964688 Setaria italica
Seita.4G077100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5957940-5958939 Setaria italica
Seita.4G077100 2.0kb upstream 2.0kb upstream 7749 true scaffold_4: 5958940-5966688 Setaria italica
Seita.4G077100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5964689-5966688 Setaria italica
Seita.4G077100 2.0kb downstream 2.0kb downstream 7749 true scaffold_4: 5956940-5964688 Setaria italica
Seita.4G077100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5956940-5958939 Setaria italica
Seita.4G077100 5.0kb upstream 5.0kb upstream 10749 true scaffold_4: 5958940-5969688 Setaria italica
Seita.4G077100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5964689-5969688 Setaria italica
Seita.4G077100 5.0kb downstream 5.0kb downstream 10749 true scaffold_4: 5953940-5964688 Setaria italica
Seita.4G077100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5953940-5958939 Setaria italica
Seita.4G077100 10.0kb upstream 10.0kb upstream 15749 true scaffold_4: 5958940-5974688 Setaria italica
Seita.4G077100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5964689-5974688 Setaria italica
Seita.4G077100 10.0kb downstream 10.0kb downstream 15749 true scaffold_4: 5948940-5964688 Setaria italica
Seita.4G077100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5948940-5958939 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180528 5267 Panicoideae View MSA
124574078 5269 Grass View MSA
122048372 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121348447 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.96        
cufflinks 3.464        
cufflinks 0.975       Low
cufflinks 0.716       Low
cufflinks 0.742       Low
cufflinks 3.17        
cufflinks 1.883        
cufflinks 3.213        
cufflinks 1.519        
cufflinks 1.44        
cufflinks 1.635        
cufflinks 4.014       High
cufflinks 2.086        
cufflinks 2.109        
cufflinks 4.702       High
cufflinks 2.06        
cufflinks 4.629       High
cufflinks 2.351        
cufflinks 1.465        
cufflinks 5.209       High

0 Strain