Gene : Seita.4G080900 S. italica v2.2
Defline:  (1 of 1) PTHR13251 - EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 Genomic Order:  809
Name:  ? Seita.4G080900 Secondary Identifier:  ? PAC:32707668
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G080900 0.5kb upstream 0.5kb upstream 10464 true scaffold_4: 6338776-6349239 Setaria italica
Seita.4G080900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 6348740-6349239 Setaria italica
Seita.4G080900 0.5kb downstream 0.5kb downstream 10464 true scaffold_4: 6338276-6348739 Setaria italica
Seita.4G080900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 6338276-6338775 Setaria italica
Seita.4G080900 1.0kb upstream 1.0kb upstream 10964 true scaffold_4: 6338776-6349739 Setaria italica
Seita.4G080900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 6348740-6349739 Setaria italica
Seita.4G080900 1.0kb downstream 1.0kb downstream 10964 true scaffold_4: 6337776-6348739 Setaria italica
Seita.4G080900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 6337776-6338775 Setaria italica
Seita.4G080900 2.0kb upstream 2.0kb upstream 11964 true scaffold_4: 6338776-6350739 Setaria italica
Seita.4G080900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 6348740-6350739 Setaria italica
Seita.4G080900 2.0kb downstream 2.0kb downstream 11964 true scaffold_4: 6336776-6348739 Setaria italica
Seita.4G080900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 6336776-6338775 Setaria italica
Seita.4G080900 5.0kb upstream 5.0kb upstream 14964 true scaffold_4: 6338776-6353739 Setaria italica
Seita.4G080900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 6348740-6353739 Setaria italica
Seita.4G080900 5.0kb downstream 5.0kb downstream 14964 true scaffold_4: 6333776-6348739 Setaria italica
Seita.4G080900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 6333776-6338775 Setaria italica
Seita.4G080900 10.0kb upstream 10.0kb upstream 19964 true scaffold_4: 6338776-6358739 Setaria italica
Seita.4G080900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 6348740-6358739 Setaria italica
Seita.4G080900 10.0kb downstream 10.0kb downstream 19964 true scaffold_4: 6328776-6348739 Setaria italica
Seita.4G080900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 6328776-6338775 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183376 5267 Panicoideae View MSA
124578118 5269 Grass View MSA
122046287 5273 Angiosperm View MSA
121348694 5274 Embryophyte View MSA
123380976 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.225     High High
cufflinks 14.483     High High
cufflinks 8.295        
cufflinks 6.594       Low
cufflinks 6.494       Low
cufflinks 11.677        
cufflinks 10.854        
cufflinks 8.41        
cufflinks 8.983        
cufflinks 8.241        
cufflinks 16.442     High High
cufflinks 10.081        
cufflinks 11.248        
cufflinks 7.255       Low
cufflinks 14.536     High High
cufflinks 9.253        
cufflinks 9.609        
cufflinks 9.013        
cufflinks 6.534       Low
cufflinks 12.747        

0 Strain