Gene : Seita.4G084200 S. italica v2.2
Defline:  (1 of 3) PTHR23354:SF75 - LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 Genomic Order:  842
Name:  ? Seita.4G084200 Secondary Identifier:  ? PAC:32709599
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G084200 0.5kb upstream 0.5kb upstream 4406 true scaffold_4: 6779291-6783696 Setaria italica
Seita.4G084200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 6783197-6783696 Setaria italica
Seita.4G084200 0.5kb downstream 0.5kb downstream 4406 true scaffold_4: 6778791-6783196 Setaria italica
Seita.4G084200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 6778791-6779290 Setaria italica
Seita.4G084200 1.0kb upstream 1.0kb upstream 4906 true scaffold_4: 6779291-6784196 Setaria italica
Seita.4G084200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 6783197-6784196 Setaria italica
Seita.4G084200 1.0kb downstream 1.0kb downstream 4906 true scaffold_4: 6778291-6783196 Setaria italica
Seita.4G084200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 6778291-6779290 Setaria italica
Seita.4G084200 2.0kb upstream 2.0kb upstream 5906 true scaffold_4: 6779291-6785196 Setaria italica
Seita.4G084200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 6783197-6785196 Setaria italica
Seita.4G084200 2.0kb downstream 2.0kb downstream 5906 true scaffold_4: 6777291-6783196 Setaria italica
Seita.4G084200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 6777291-6779290 Setaria italica
Seita.4G084200 5.0kb upstream 5.0kb upstream 8906 true scaffold_4: 6779291-6788196 Setaria italica
Seita.4G084200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 6783197-6788196 Setaria italica
Seita.4G084200 5.0kb downstream 5.0kb downstream 8906 true scaffold_4: 6774291-6783196 Setaria italica
Seita.4G084200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 6774291-6779290 Setaria italica
Seita.4G084200 10.0kb upstream 10.0kb upstream 13906 true scaffold_4: 6779291-6793196 Setaria italica
Seita.4G084200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 6783197-6793196 Setaria italica
Seita.4G084200 10.0kb downstream 10.0kb downstream 13906 true scaffold_4: 6769291-6783196 Setaria italica
Seita.4G084200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 6769291-6779290 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186320 5267 Panicoideae View MSA
124579564 5269 Grass View MSA
122046889 5273 Angiosperm View MSA
121350976 5274 Embryophyte View MSA
123381953 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.956        
cufflinks 4.683       High
cufflinks 0.126       Low
cufflinks 0.175       Low
cufflinks 0.326        
cufflinks 5.136       High
cufflinks 1.862        
cufflinks 3.625        
cufflinks 1.605        
cufflinks 3.724        
cufflinks 2.54        
cufflinks 1.667        
cufflinks 1.572        
cufflinks 0.111     Low Low
cufflinks 2.081        
cufflinks 0.545        
cufflinks 2.268        
cufflinks 0.487        
cufflinks 0.126       Low
cufflinks 2.468        

0 Strain