Gene : Seita.4G084300 S. italica v2.2
Defline:  (1 of 4) PF13350 - Tyrosine phosphatase family (Y_phosphatase3) Genomic Order:  843
Name:  ? Seita.4G084300 Secondary Identifier:  ? PAC:32709737
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G084300 0.5kb upstream 0.5kb upstream 4901 true scaffold_4: 6784001-6788901 Setaria italica
Seita.4G084300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 6788402-6788901 Setaria italica
Seita.4G084300 0.5kb downstream 0.5kb downstream 4901 true scaffold_4: 6783501-6788401 Setaria italica
Seita.4G084300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 6783501-6784000 Setaria italica
Seita.4G084300 1.0kb upstream 1.0kb upstream 5401 true scaffold_4: 6784001-6789401 Setaria italica
Seita.4G084300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 6788402-6789401 Setaria italica
Seita.4G084300 1.0kb downstream 1.0kb downstream 5401 true scaffold_4: 6783001-6788401 Setaria italica
Seita.4G084300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 6783001-6784000 Setaria italica
Seita.4G084300 2.0kb upstream 2.0kb upstream 6401 true scaffold_4: 6784001-6790401 Setaria italica
Seita.4G084300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 6788402-6790401 Setaria italica
Seita.4G084300 2.0kb downstream 2.0kb downstream 6401 true scaffold_4: 6782001-6788401 Setaria italica
Seita.4G084300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 6782001-6784000 Setaria italica
Seita.4G084300 5.0kb upstream 5.0kb upstream 9401 true scaffold_4: 6784001-6793401 Setaria italica
Seita.4G084300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 6788402-6793401 Setaria italica
Seita.4G084300 5.0kb downstream 5.0kb downstream 9401 true scaffold_4: 6779001-6788401 Setaria italica
Seita.4G084300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 6779001-6784000 Setaria italica
Seita.4G084300 10.0kb upstream 10.0kb upstream 14401 true scaffold_4: 6784001-6798401 Setaria italica
Seita.4G084300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 6788402-6798401 Setaria italica
Seita.4G084300 10.0kb downstream 10.0kb downstream 14401 true scaffold_4: 6774001-6788401 Setaria italica
Seita.4G084300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 6774001-6784000 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191546 5267 Panicoideae View MSA
124578787 5269 Grass View MSA
122050938 5273 Angiosperm View MSA
121344841 5274 Embryophyte View MSA
123380112 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.402       Low
cufflinks 2.649       Low
cufflinks 56.597     High High
cufflinks 63.38     High High
cufflinks 52.921     High High
cufflinks 3.314       Low
cufflinks 21.437     High  
cufflinks 28.887     High  
cufflinks 14.663     High  
cufflinks 9.989        
cufflinks 6.144        
cufflinks 10.138        
cufflinks 5.979        
cufflinks 28.41     High  
cufflinks 8.066        
cufflinks 26.015     High  
cufflinks 9.913        
cufflinks 23.935     High  
cufflinks 60.88     High High
cufflinks 9.48        

0 Strain