Gene : Seita.4G088100 S. italica v2.2
Defline:  (1 of 2) PTHR24078:SF247 - CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL Genomic Order:  881
Name:  ? Seita.4G088100 Secondary Identifier:  ? PAC:32708459
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G088100 0.5kb upstream 0.5kb upstream 10398 true scaffold_4: 7292346-7302743 Setaria italica
Seita.4G088100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7302244-7302743 Setaria italica
Seita.4G088100 0.5kb downstream 0.5kb downstream 10398 true scaffold_4: 7291846-7302243 Setaria italica
Seita.4G088100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7291846-7292345 Setaria italica
Seita.4G088100 1.0kb upstream 1.0kb upstream 10898 true scaffold_4: 7292346-7303243 Setaria italica
Seita.4G088100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7302244-7303243 Setaria italica
Seita.4G088100 1.0kb downstream 1.0kb downstream 10898 true scaffold_4: 7291346-7302243 Setaria italica
Seita.4G088100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7291346-7292345 Setaria italica
Seita.4G088100 2.0kb upstream 2.0kb upstream 11898 true scaffold_4: 7292346-7304243 Setaria italica
Seita.4G088100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7302244-7304243 Setaria italica
Seita.4G088100 2.0kb downstream 2.0kb downstream 11898 true scaffold_4: 7290346-7302243 Setaria italica
Seita.4G088100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7290346-7292345 Setaria italica
Seita.4G088100 5.0kb upstream 5.0kb upstream 14898 true scaffold_4: 7292346-7307243 Setaria italica
Seita.4G088100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7302244-7307243 Setaria italica
Seita.4G088100 5.0kb downstream 5.0kb downstream 14898 true scaffold_4: 7287346-7302243 Setaria italica
Seita.4G088100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7287346-7292345 Setaria italica
Seita.4G088100 10.0kb upstream 10.0kb upstream 19898 true scaffold_4: 7292346-7312243 Setaria italica
Seita.4G088100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7302244-7312243 Setaria italica
Seita.4G088100 10.0kb downstream 10.0kb downstream 19898 true scaffold_4: 7282346-7302243 Setaria italica
Seita.4G088100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7282346-7292345 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187945 5267 Panicoideae View MSA
124585536 5269 Grass View MSA
122049089 5273 Angiosperm View MSA
123429128 5275 Viridiplantae View MSA
121311242 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.629        
cufflinks 0.63        
cufflinks 0.408        
cufflinks 0.276       Low
cufflinks 0.339       Low
cufflinks 0.712        
cufflinks 0.449        
cufflinks 0.686        
cufflinks 0.579        
cufflinks 0.499        
cufflinks 0.543        
cufflinks 0.741        
cufflinks 0.441        
cufflinks 0.606        
cufflinks 0.65        
cufflinks 0.554        
cufflinks 0.74        
cufflinks 1.036       High
cufflinks 0.243       Low
cufflinks 0.638        

0 Strain