Gene : Seita.4G088000 S. italica v2.2
Defline:  (1 of 1) PTHR31969:SF4 - GEM-LIKE PROTEIN 1-RELATED Genomic Order:  880
Name:  ? Seita.4G088000 Secondary Identifier:  ? PAC:32708169
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G088000 0.5kb upstream 0.5kb upstream 2970 true scaffold_4: 7289100-7292069 Setaria italica
Seita.4G088000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7289100-7289599 Setaria italica
Seita.4G088000 0.5kb downstream 0.5kb downstream 2970 true scaffold_4: 7289600-7292569 Setaria italica
Seita.4G088000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7292070-7292569 Setaria italica
Seita.4G088000 1.0kb upstream 1.0kb upstream 3470 true scaffold_4: 7288600-7292069 Setaria italica
Seita.4G088000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7288600-7289599 Setaria italica
Seita.4G088000 1.0kb downstream 1.0kb downstream 3470 true scaffold_4: 7289600-7293069 Setaria italica
Seita.4G088000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7292070-7293069 Setaria italica
Seita.4G088000 2.0kb upstream 2.0kb upstream 4470 true scaffold_4: 7287600-7292069 Setaria italica
Seita.4G088000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7287600-7289599 Setaria italica
Seita.4G088000 2.0kb downstream 2.0kb downstream 4470 true scaffold_4: 7289600-7294069 Setaria italica
Seita.4G088000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7292070-7294069 Setaria italica
Seita.4G088000 5.0kb upstream 5.0kb upstream 7470 true scaffold_4: 7284600-7292069 Setaria italica
Seita.4G088000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7284600-7289599 Setaria italica
Seita.4G088000 5.0kb downstream 5.0kb downstream 7470 true scaffold_4: 7289600-7297069 Setaria italica
Seita.4G088000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7292070-7297069 Setaria italica
Seita.4G088000 10.0kb upstream 10.0kb upstream 12470 true scaffold_4: 7279600-7292069 Setaria italica
Seita.4G088000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7279600-7289599 Setaria italica
Seita.4G088000 10.0kb downstream 10.0kb downstream 12470 true scaffold_4: 7289600-7302069 Setaria italica
Seita.4G088000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7292070-7302069 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191056 5267 Panicoideae View MSA
124585316 5269 Grass View MSA
122050342 5273 Angiosperm View MSA
121350470 5274 Embryophyte View MSA
123381748 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.167        
cufflinks 8.713        
cufflinks 4.457       Low
cufflinks 3.861       Low
cufflinks 4.325       Low
cufflinks 9.11        
cufflinks 7.183        
cufflinks 7.073        
cufflinks 5.145       Low
cufflinks 15.099       High
cufflinks 11.741        
cufflinks 12.415        
cufflinks 11.509        
cufflinks 5.82        
cufflinks 15.127     High High
cufflinks 6.129        
cufflinks 15.839     High High
cufflinks 9.045        
cufflinks 6.492        
cufflinks 13.106       High

0 Strain