Gene : Seita.4G017800 S. italica v2.2
Defline:  (1 of 1) PTHR14927:SF0 - NUCLEOLAR PROTEIN 10 Genomic Order:  178
Name:  ? Seita.4G017800 Secondary Identifier:  ? PAC:32709363
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G017800 0.5kb upstream 0.5kb upstream 7955 true scaffold_4: 1175630-1183584 Setaria italica
Seita.4G017800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1175630-1176129 Setaria italica
Seita.4G017800 0.5kb downstream 0.5kb downstream 7955 true scaffold_4: 1176130-1184084 Setaria italica
Seita.4G017800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1183585-1184084 Setaria italica
Seita.4G017800 1.0kb upstream 1.0kb upstream 8455 true scaffold_4: 1175130-1183584 Setaria italica
Seita.4G017800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1175130-1176129 Setaria italica
Seita.4G017800 1.0kb downstream 1.0kb downstream 8455 true scaffold_4: 1176130-1184584 Setaria italica
Seita.4G017800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1183585-1184584 Setaria italica
Seita.4G017800 2.0kb upstream 2.0kb upstream 9455 true scaffold_4: 1174130-1183584 Setaria italica
Seita.4G017800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1174130-1176129 Setaria italica
Seita.4G017800 2.0kb downstream 2.0kb downstream 9455 true scaffold_4: 1176130-1185584 Setaria italica
Seita.4G017800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1183585-1185584 Setaria italica
Seita.4G017800 5.0kb upstream 5.0kb upstream 12455 true scaffold_4: 1171130-1183584 Setaria italica
Seita.4G017800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1171130-1176129 Setaria italica
Seita.4G017800 5.0kb downstream 5.0kb downstream 12455 true scaffold_4: 1176130-1188584 Setaria italica
Seita.4G017800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1183585-1188584 Setaria italica
Seita.4G017800 10.0kb upstream 10.0kb upstream 17455 true scaffold_4: 1166130-1183584 Setaria italica
Seita.4G017800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1166130-1176129 Setaria italica
Seita.4G017800 10.0kb downstream 10.0kb downstream 17455 true scaffold_4: 1176130-1193584 Setaria italica
Seita.4G017800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1183585-1193584 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191510 5267 Panicoideae View MSA
124581285 5269 Grass View MSA
122042207 5273 Angiosperm View MSA
121344508 5274 Embryophyte View MSA
123424204 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.302        
cufflinks 4.6       High
cufflinks 1.811        
cufflinks 0.774       Low
cufflinks 1.462        
cufflinks 4.909       High
cufflinks 2.212        
cufflinks 2.067        
cufflinks 2.915        
cufflinks 1.497        
cufflinks 3.02        
cufflinks 2.681        
cufflinks 1.515        
cufflinks 2.49        
cufflinks 3.542        
cufflinks 2.451        
cufflinks 2.711        
cufflinks 2.627        
cufflinks 1.08       Low
cufflinks 2.82        

0 Strain