Gene : Seita.4G020500 S. italica v2.2
Defline:  (1 of 4) KOG0884 - Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase Genomic Order:  205
Name:  ? Seita.4G020500 Secondary Identifier:  ? PAC:32707554
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G020500 0.5kb upstream 0.5kb upstream 1883 true scaffold_4: 1353165-1355047 Setaria italica
Seita.4G020500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1353165-1353664 Setaria italica
Seita.4G020500 0.5kb downstream 0.5kb downstream 1883 true scaffold_4: 1353665-1355547 Setaria italica
Seita.4G020500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1355048-1355547 Setaria italica
Seita.4G020500 1.0kb upstream 1.0kb upstream 2383 true scaffold_4: 1352665-1355047 Setaria italica
Seita.4G020500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1352665-1353664 Setaria italica
Seita.4G020500 1.0kb downstream 1.0kb downstream 2383 true scaffold_4: 1353665-1356047 Setaria italica
Seita.4G020500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1355048-1356047 Setaria italica
Seita.4G020500 2.0kb upstream 2.0kb upstream 3383 true scaffold_4: 1351665-1355047 Setaria italica
Seita.4G020500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1351665-1353664 Setaria italica
Seita.4G020500 2.0kb downstream 2.0kb downstream 3383 true scaffold_4: 1353665-1357047 Setaria italica
Seita.4G020500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1355048-1357047 Setaria italica
Seita.4G020500 5.0kb upstream 5.0kb upstream 6383 true scaffold_4: 1348665-1355047 Setaria italica
Seita.4G020500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1348665-1353664 Setaria italica
Seita.4G020500 5.0kb downstream 5.0kb downstream 6383 true scaffold_4: 1353665-1360047 Setaria italica
Seita.4G020500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1355048-1360047 Setaria italica
Seita.4G020500 10.0kb upstream 10.0kb upstream 11383 true scaffold_4: 1343665-1355047 Setaria italica
Seita.4G020500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1343665-1353664 Setaria italica
Seita.4G020500 10.0kb downstream 10.0kb downstream 11383 true scaffold_4: 1353665-1365047 Setaria italica
Seita.4G020500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1355048-1365047 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190092 5267 Panicoideae View MSA
124572282 5269 Grass View MSA
122045315 5273 Angiosperm View MSA
121347403 5274 Embryophyte View MSA
123424024 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.483        
cufflinks 5.02        
cufflinks 7.985       High
cufflinks 9.361       High
cufflinks 5.631        
cufflinks 5.679        
cufflinks 3.422       Low
cufflinks 4.544        
cufflinks 2.557       Low
cufflinks 16.075     High High
cufflinks 4.154        
cufflinks 3.212       Low
cufflinks 4.842        
cufflinks 8.085       High
cufflinks 5.522        
cufflinks 3.762        
cufflinks 4.835        
cufflinks 4.859        
cufflinks 5.917        
cufflinks 5.257        

0 Strain