Gene : Seita.4G024400 S. italica v2.2
Defline:  (1 of 3) PTHR10264:SF69 - HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 4 Genomic Order:  244
Name:  ? Seita.4G024400 Secondary Identifier:  ? PAC:32708118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G024400 0.5kb upstream 0.5kb upstream 2977 true scaffold_4: 1615321-1618297 Setaria italica
Seita.4G024400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1617798-1618297 Setaria italica
Seita.4G024400 0.5kb downstream 0.5kb downstream 2977 true scaffold_4: 1614821-1617797 Setaria italica
Seita.4G024400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1614821-1615320 Setaria italica
Seita.4G024400 1.0kb upstream 1.0kb upstream 3477 true scaffold_4: 1615321-1618797 Setaria italica
Seita.4G024400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1617798-1618797 Setaria italica
Seita.4G024400 1.0kb downstream 1.0kb downstream 3477 true scaffold_4: 1614321-1617797 Setaria italica
Seita.4G024400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1614321-1615320 Setaria italica
Seita.4G024400 2.0kb upstream 2.0kb upstream 4477 true scaffold_4: 1615321-1619797 Setaria italica
Seita.4G024400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1617798-1619797 Setaria italica
Seita.4G024400 2.0kb downstream 2.0kb downstream 4477 true scaffold_4: 1613321-1617797 Setaria italica
Seita.4G024400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1613321-1615320 Setaria italica
Seita.4G024400 5.0kb upstream 5.0kb upstream 7477 true scaffold_4: 1615321-1622797 Setaria italica
Seita.4G024400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1617798-1622797 Setaria italica
Seita.4G024400 5.0kb downstream 5.0kb downstream 7477 true scaffold_4: 1610321-1617797 Setaria italica
Seita.4G024400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1610321-1615320 Setaria italica
Seita.4G024400 10.0kb upstream 10.0kb upstream 12477 true scaffold_4: 1615321-1627797 Setaria italica
Seita.4G024400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1617798-1627797 Setaria italica
Seita.4G024400 10.0kb downstream 10.0kb downstream 12477 true scaffold_4: 1605321-1617797 Setaria italica
Seita.4G024400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1605321-1615320 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177417 5267 Panicoideae View MSA
124573931 5269 Grass View MSA
122047098 5273 Angiosperm View MSA
121346579 5274 Embryophyte View MSA
123427890 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.626        
cufflinks 9.714       Low
cufflinks 28.053     High High
cufflinks 26.542     High High
cufflinks 14.458     High  
cufflinks 10.534        
cufflinks 12.152        
cufflinks 11.646        
cufflinks 8.063       Low
cufflinks 9.891       Low
cufflinks 9.765       Low
cufflinks 16.151     High  
cufflinks 14.975     High  
cufflinks 24.313     High High
cufflinks 13.21        
cufflinks 13.556     High  
cufflinks 16.998     High  
cufflinks 18.506     High  
cufflinks 24.304     High High
cufflinks 13.918        

0 Strain