Gene : Seita.4G023300 S. italica v2.2
Defline:  (1 of 2) PTHR11700//PTHR11700:SF10 - 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER Genomic Order:  233
Name:  ? Seita.4G023300 Secondary Identifier:  ? PAC:32706906
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G023300 0.5kb upstream 0.5kb upstream 3119 true scaffold_4: 1561786-1564904 Setaria italica
Seita.4G023300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1564405-1564904 Setaria italica
Seita.4G023300 0.5kb downstream 0.5kb downstream 3119 true scaffold_4: 1561286-1564404 Setaria italica
Seita.4G023300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1561286-1561785 Setaria italica
Seita.4G023300 1.0kb upstream 1.0kb upstream 3619 true scaffold_4: 1561786-1565404 Setaria italica
Seita.4G023300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1564405-1565404 Setaria italica
Seita.4G023300 1.0kb downstream 1.0kb downstream 3619 true scaffold_4: 1560786-1564404 Setaria italica
Seita.4G023300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1560786-1561785 Setaria italica
Seita.4G023300 2.0kb upstream 2.0kb upstream 4619 true scaffold_4: 1561786-1566404 Setaria italica
Seita.4G023300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1564405-1566404 Setaria italica
Seita.4G023300 2.0kb downstream 2.0kb downstream 4619 true scaffold_4: 1559786-1564404 Setaria italica
Seita.4G023300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1559786-1561785 Setaria italica
Seita.4G023300 5.0kb upstream 5.0kb upstream 7619 true scaffold_4: 1561786-1569404 Setaria italica
Seita.4G023300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1564405-1569404 Setaria italica
Seita.4G023300 5.0kb downstream 5.0kb downstream 7619 true scaffold_4: 1556786-1564404 Setaria italica
Seita.4G023300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1556786-1561785 Setaria italica
Seita.4G023300 10.0kb upstream 10.0kb upstream 12619 true scaffold_4: 1561786-1574404 Setaria italica
Seita.4G023300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1564405-1574404 Setaria italica
Seita.4G023300 10.0kb downstream 10.0kb downstream 12619 true scaffold_4: 1551786-1564404 Setaria italica
Seita.4G023300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1551786-1561785 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189318 5267 Panicoideae View MSA
124581889 5269 Grass View MSA
122044190 5273 Angiosperm View MSA
121349858 5274 Embryophyte View MSA
123426171 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.498        
cufflinks 21.84     High  
cufflinks 3.3       Low
cufflinks 2.108       Low
cufflinks 4.587        
cufflinks 23.427     High  
cufflinks 9.809        
cufflinks 24.341     High High
cufflinks 23.625     High  
cufflinks 32.574     High High
cufflinks 14.672     High  
cufflinks 13.05        
cufflinks 10.024        
cufflinks 8.791        
cufflinks 18.11     High  
cufflinks 3.544       Low
cufflinks 21.495     High  
cufflinks 2.806       Low
cufflinks 4.535        
cufflinks 22.135     High  

0 Strain