Gene : Seita.4G031200 S. italica v2.2
Defline:  (1 of 1) PTHR11404:SF17 - SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC Genomic Order:  312
Name:  ? Seita.4G031200 Secondary Identifier:  ? PAC:32706652
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY Setaria italica pathologic  
Sitalica DETOX1-PWY-1 Setaria italica pathologic  
Sitalica PWY-6854 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G031200 0.5kb upstream 0.5kb upstream 3751 true scaffold_4: 2020203-2023953 Setaria italica
Seita.4G031200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2020203-2020702 Setaria italica
Seita.4G031200 0.5kb downstream 0.5kb downstream 3751 true scaffold_4: 2020703-2024453 Setaria italica
Seita.4G031200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2023954-2024453 Setaria italica
Seita.4G031200 1.0kb upstream 1.0kb upstream 4251 true scaffold_4: 2019703-2023953 Setaria italica
Seita.4G031200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2019703-2020702 Setaria italica
Seita.4G031200 1.0kb downstream 1.0kb downstream 4251 true scaffold_4: 2020703-2024953 Setaria italica
Seita.4G031200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2023954-2024953 Setaria italica
Seita.4G031200 2.0kb upstream 2.0kb upstream 5251 true scaffold_4: 2018703-2023953 Setaria italica
Seita.4G031200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2018703-2020702 Setaria italica
Seita.4G031200 2.0kb downstream 2.0kb downstream 5251 true scaffold_4: 2020703-2025953 Setaria italica
Seita.4G031200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2023954-2025953 Setaria italica
Seita.4G031200 5.0kb upstream 5.0kb upstream 8251 true scaffold_4: 2015703-2023953 Setaria italica
Seita.4G031200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2015703-2020702 Setaria italica
Seita.4G031200 5.0kb downstream 5.0kb downstream 8251 true scaffold_4: 2020703-2028953 Setaria italica
Seita.4G031200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2023954-2028953 Setaria italica
Seita.4G031200 10.0kb upstream 10.0kb upstream 13251 true scaffold_4: 2010703-2023953 Setaria italica
Seita.4G031200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2010703-2020702 Setaria italica
Seita.4G031200 10.0kb downstream 10.0kb downstream 13251 true scaffold_4: 2020703-2033953 Setaria italica
Seita.4G031200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2023954-2033953 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176152 5267 Panicoideae View MSA
124569042 5269 Grass View MSA
122044976 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.973     High High
cufflinks 6.928        
cufflinks 2.157       Low
cufflinks 0.992       Low
cufflinks 3.73        
cufflinks 7.403        
cufflinks 13.325     High  
cufflinks 16.132     High High
cufflinks 26.202     High High
cufflinks 10.545        
cufflinks 10.487        
cufflinks 2.651        
cufflinks 3.552        
cufflinks 5.005        
cufflinks 2.748        
cufflinks 13.909     High  
cufflinks 4.205        
cufflinks 11.197     High  
cufflinks 0.977       Low
cufflinks 2.984        

0 Strain