Gene : Seita.4G034000 S. italica v2.2
Defline:  (1 of 7) PF09353 - Domain of unknown function (DUF1995) (DUF1995) Genomic Order:  340
Name:  ? Seita.4G034000 Secondary Identifier:  ? PAC:32709352
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G034000 0.5kb upstream 0.5kb upstream 4398 true scaffold_4: 2230018-2234415 Setaria italica
Seita.4G034000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2233916-2234415 Setaria italica
Seita.4G034000 0.5kb downstream 0.5kb downstream 4398 true scaffold_4: 2229518-2233915 Setaria italica
Seita.4G034000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2229518-2230017 Setaria italica
Seita.4G034000 1.0kb upstream 1.0kb upstream 4898 true scaffold_4: 2230018-2234915 Setaria italica
Seita.4G034000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2233916-2234915 Setaria italica
Seita.4G034000 1.0kb downstream 1.0kb downstream 4898 true scaffold_4: 2229018-2233915 Setaria italica
Seita.4G034000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2229018-2230017 Setaria italica
Seita.4G034000 2.0kb upstream 2.0kb upstream 5898 true scaffold_4: 2230018-2235915 Setaria italica
Seita.4G034000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2233916-2235915 Setaria italica
Seita.4G034000 2.0kb downstream 2.0kb downstream 5898 true scaffold_4: 2228018-2233915 Setaria italica
Seita.4G034000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2228018-2230017 Setaria italica
Seita.4G034000 5.0kb upstream 5.0kb upstream 8898 true scaffold_4: 2230018-2238915 Setaria italica
Seita.4G034000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2233916-2238915 Setaria italica
Seita.4G034000 5.0kb downstream 5.0kb downstream 8898 true scaffold_4: 2225018-2233915 Setaria italica
Seita.4G034000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2225018-2230017 Setaria italica
Seita.4G034000 10.0kb upstream 10.0kb upstream 13898 true scaffold_4: 2230018-2243915 Setaria italica
Seita.4G034000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2233916-2243915 Setaria italica
Seita.4G034000 10.0kb downstream 10.0kb downstream 13898 true scaffold_4: 2220018-2233915 Setaria italica
Seita.4G034000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2220018-2230017 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185712 5267 Panicoideae View MSA
124570729 5269 Grass View MSA
122043787 5273 Angiosperm View MSA
121346197 5274 Embryophyte View MSA
123425008 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.494        
cufflinks 5.072        
cufflinks 17.209     High  
cufflinks 19.402     High  
cufflinks 18.485     High  
cufflinks 5.695        
cufflinks 14.698     High  
cufflinks 21.9     High High
cufflinks 19.862     High High
cufflinks 3.1        
cufflinks 2.747        
cufflinks 1.045       Low
cufflinks 1.122       Low
cufflinks 10.941        
cufflinks 0.598       Low
cufflinks 17.31     High  
cufflinks 1.032       Low
cufflinks 4.242        
cufflinks 26.421     High High
cufflinks 0.786       Low

0 Strain