Gene : Seita.4G039200 S. italica v2.2
Defline:  (1 of 2) PTHR11760:SF21 - TAIL-ANCHORED PROTEIN INSERTION RECEPTOR WRB Genomic Order:  392
Name:  ? Seita.4G039200 Secondary Identifier:  ? PAC:32709567
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G039200 0.5kb upstream 0.5kb upstream 3150 true scaffold_4: 2622980-2626129 Setaria italica
Seita.4G039200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2625630-2626129 Setaria italica
Seita.4G039200 0.5kb downstream 0.5kb downstream 3150 true scaffold_4: 2622480-2625629 Setaria italica
Seita.4G039200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2622480-2622979 Setaria italica
Seita.4G039200 1.0kb upstream 1.0kb upstream 3650 true scaffold_4: 2622980-2626629 Setaria italica
Seita.4G039200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2625630-2626629 Setaria italica
Seita.4G039200 1.0kb downstream 1.0kb downstream 3650 true scaffold_4: 2621980-2625629 Setaria italica
Seita.4G039200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2621980-2622979 Setaria italica
Seita.4G039200 2.0kb upstream 2.0kb upstream 4650 true scaffold_4: 2622980-2627629 Setaria italica
Seita.4G039200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2625630-2627629 Setaria italica
Seita.4G039200 2.0kb downstream 2.0kb downstream 4650 true scaffold_4: 2620980-2625629 Setaria italica
Seita.4G039200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2620980-2622979 Setaria italica
Seita.4G039200 5.0kb upstream 5.0kb upstream 7650 true scaffold_4: 2622980-2630629 Setaria italica
Seita.4G039200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2625630-2630629 Setaria italica
Seita.4G039200 5.0kb downstream 5.0kb downstream 7650 true scaffold_4: 2617980-2625629 Setaria italica
Seita.4G039200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2617980-2622979 Setaria italica
Seita.4G039200 10.0kb upstream 10.0kb upstream 12650 true scaffold_4: 2622980-2635629 Setaria italica
Seita.4G039200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2625630-2635629 Setaria italica
Seita.4G039200 10.0kb downstream 10.0kb downstream 12650 true scaffold_4: 2612980-2625629 Setaria italica
Seita.4G039200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2612980-2622979 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184659 5267 Panicoideae View MSA
124571619 5269 Grass View MSA
122042993 5273 Angiosperm View MSA
121344055 5274 Embryophyte View MSA
123425575 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.009     Low  
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.021     Low  
cufflinks 0.015     Low  
cufflinks 0.027     Low  
cufflinks 0.008     Low  
cufflinks 0.291     Low High
cufflinks 0.018     Low  
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain