Gene : Seita.4G043000 S. italica v2.2
Defline:  (1 of 3) PTHR10902 - 60S RIBOSOMAL PROTEIN L35A Genomic Order:  430
Name:  ? Seita.4G043000 Secondary Identifier:  ? PAC:32708630
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G043000 0.5kb upstream 0.5kb upstream 2235 true scaffold_4: 3155446-3157680 Setaria italica
Seita.4G043000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3155446-3155945 Setaria italica
Seita.4G043000 0.5kb downstream 0.5kb downstream 2235 true scaffold_4: 3155946-3158180 Setaria italica
Seita.4G043000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3157681-3158180 Setaria italica
Seita.4G043000 1.0kb upstream 1.0kb upstream 2735 true scaffold_4: 3154946-3157680 Setaria italica
Seita.4G043000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3154946-3155945 Setaria italica
Seita.4G043000 1.0kb downstream 1.0kb downstream 2735 true scaffold_4: 3155946-3158680 Setaria italica
Seita.4G043000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3157681-3158680 Setaria italica
Seita.4G043000 2.0kb upstream 2.0kb upstream 3735 true scaffold_4: 3153946-3157680 Setaria italica
Seita.4G043000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3153946-3155945 Setaria italica
Seita.4G043000 2.0kb downstream 2.0kb downstream 3735 true scaffold_4: 3155946-3159680 Setaria italica
Seita.4G043000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3157681-3159680 Setaria italica
Seita.4G043000 5.0kb upstream 5.0kb upstream 6735 true scaffold_4: 3150946-3157680 Setaria italica
Seita.4G043000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3150946-3155945 Setaria italica
Seita.4G043000 5.0kb downstream 5.0kb downstream 6735 true scaffold_4: 3155946-3162680 Setaria italica
Seita.4G043000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3157681-3162680 Setaria italica
Seita.4G043000 10.0kb upstream 10.0kb upstream 11735 true scaffold_4: 3145946-3157680 Setaria italica
Seita.4G043000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3145946-3155945 Setaria italica
Seita.4G043000 10.0kb downstream 10.0kb downstream 11735 true scaffold_4: 3155946-3167680 Setaria italica
Seita.4G043000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3157681-3167680 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197702 5267 Panicoideae View MSA
124589102 5269 Grass View MSA
122043317 5273 Angiosperm View MSA
121349974 5274 Embryophyte View MSA
123428152 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.173     High  
cufflinks 78.056     High  
cufflinks 12.989     High Low
cufflinks 7.389       Low
cufflinks 18.021     High Low
cufflinks 81.771     High  
cufflinks 51.407     High  
cufflinks 109.294     High High
cufflinks 105.911     High High
cufflinks 91.31     High  
cufflinks 60.82     High  
cufflinks 50.924     High  
cufflinks 42.432     High  
cufflinks 34.774     High  
cufflinks 69.702     High  
cufflinks 15.151     High Low
cufflinks 90.875     High  
cufflinks 12.128     High Low
cufflinks 18.923     High  
cufflinks 100.437     High High

0 Strain