Gene : Seita.4G043700 S. italica v2.2
Defline:  (1 of 1) PTHR23153:SF37 - DNA DAMAGE RESPONSE PROTEIN WSS1 Genomic Order:  437
Name:  ? Seita.4G043700 Secondary Identifier:  ? PAC:32707496
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G043700 0.5kb upstream 0.5kb upstream 5245 true scaffold_4: 3197721-3202965 Setaria italica
Seita.4G043700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3202466-3202965 Setaria italica
Seita.4G043700 0.5kb downstream 0.5kb downstream 5245 true scaffold_4: 3197221-3202465 Setaria italica
Seita.4G043700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3197221-3197720 Setaria italica
Seita.4G043700 1.0kb upstream 1.0kb upstream 5745 true scaffold_4: 3197721-3203465 Setaria italica
Seita.4G043700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3202466-3203465 Setaria italica
Seita.4G043700 1.0kb downstream 1.0kb downstream 5745 true scaffold_4: 3196721-3202465 Setaria italica
Seita.4G043700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3196721-3197720 Setaria italica
Seita.4G043700 2.0kb upstream 2.0kb upstream 6745 true scaffold_4: 3197721-3204465 Setaria italica
Seita.4G043700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3202466-3204465 Setaria italica
Seita.4G043700 2.0kb downstream 2.0kb downstream 6745 true scaffold_4: 3195721-3202465 Setaria italica
Seita.4G043700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3195721-3197720 Setaria italica
Seita.4G043700 5.0kb upstream 5.0kb upstream 9745 true scaffold_4: 3197721-3207465 Setaria italica
Seita.4G043700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3202466-3207465 Setaria italica
Seita.4G043700 5.0kb downstream 5.0kb downstream 9745 true scaffold_4: 3192721-3202465 Setaria italica
Seita.4G043700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3192721-3197720 Setaria italica
Seita.4G043700 10.0kb upstream 10.0kb upstream 14745 true scaffold_4: 3197721-3212465 Setaria italica
Seita.4G043700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3202466-3212465 Setaria italica
Seita.4G043700 10.0kb downstream 10.0kb downstream 14745 true scaffold_4: 3187721-3202465 Setaria italica
Seita.4G043700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3187721-3197720 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183989 5267 Panicoideae View MSA
124576863 5269 Grass View MSA
122043963 5273 Angiosperm View MSA
121347536 5274 Embryophyte View MSA
123425458 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.305        
cufflinks 1.24        
cufflinks 0.689       Low
cufflinks 0.752       Low
cufflinks 0.896        
cufflinks 1.222        
cufflinks 0.872        
cufflinks 0.992        
cufflinks 1.02        
cufflinks 1.863       High
cufflinks 1.328        
cufflinks 1.594       High
cufflinks 1.322        
cufflinks 0.767       Low
cufflinks 1.522       High
cufflinks 1.003        
cufflinks 1.72       High
cufflinks 1.444        
cufflinks 0.72       Low
cufflinks 1.225        

0 Strain