Gene : Seita.4G047900 S. italica v2.2
Defline:  (1 of 1) PTHR24223:SF232 - SERINE PROTEASE/ABC TRANSPORTER B FAMILY PROTEIN TAGB-RELATED Genomic Order:  479
Name:  ? Seita.4G047900 Secondary Identifier:  ? PAC:32707938
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G047900 0.5kb upstream 0.5kb upstream 16371 true scaffold_4: 3520541-3536911 Setaria italica
Seita.4G047900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3536412-3536911 Setaria italica
Seita.4G047900 0.5kb downstream 0.5kb downstream 16371 true scaffold_4: 3520041-3536411 Setaria italica
Seita.4G047900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3520041-3520540 Setaria italica
Seita.4G047900 1.0kb upstream 1.0kb upstream 16871 true scaffold_4: 3520541-3537411 Setaria italica
Seita.4G047900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3536412-3537411 Setaria italica
Seita.4G047900 1.0kb downstream 1.0kb downstream 16871 true scaffold_4: 3519541-3536411 Setaria italica
Seita.4G047900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3519541-3520540 Setaria italica
Seita.4G047900 2.0kb upstream 2.0kb upstream 17871 true scaffold_4: 3520541-3538411 Setaria italica
Seita.4G047900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3536412-3538411 Setaria italica
Seita.4G047900 2.0kb downstream 2.0kb downstream 17871 true scaffold_4: 3518541-3536411 Setaria italica
Seita.4G047900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3518541-3520540 Setaria italica
Seita.4G047900 5.0kb upstream 5.0kb upstream 20871 true scaffold_4: 3520541-3541411 Setaria italica
Seita.4G047900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3536412-3541411 Setaria italica
Seita.4G047900 5.0kb downstream 5.0kb downstream 20871 true scaffold_4: 3515541-3536411 Setaria italica
Seita.4G047900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3515541-3520540 Setaria italica
Seita.4G047900 10.0kb upstream 10.0kb upstream 25871 true scaffold_4: 3520541-3546411 Setaria italica
Seita.4G047900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3536412-3546411 Setaria italica
Seita.4G047900 10.0kb downstream 10.0kb downstream 25871 true scaffold_4: 3510541-3536411 Setaria italica
Seita.4G047900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3510541-3520540 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182330 5267 Panicoideae View MSA
124578952 5269 Grass View MSA
122042350 5273 Angiosperm View MSA
123429075 5275 Viridiplantae View MSA
121346699 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.543       High
cufflinks 0.451        
cufflinks 0.376        
cufflinks 0.187       Low
cufflinks 0.282       Low
cufflinks 0.515        
cufflinks 0.531        
cufflinks 0.538        
cufflinks 0.606        
cufflinks 0.561        
cufflinks 0.999       High
cufflinks 0.749        
cufflinks 0.517        
cufflinks 0.732        
cufflinks 0.619        
cufflinks 0.655        
cufflinks 0.765        
cufflinks 0.762        
cufflinks 0.211       Low
cufflinks 0.574        

0 Strain