Gene : Seita.4G050000 S. italica v2.2
Defline:  (1 of 1) PTHR10799:SF788 - CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN MI-2 HOMOLOG Genomic Order:  500
Name:  ? Seita.4G050000 Secondary Identifier:  ? PAC:32707971
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G050000 0.5kb upstream 0.5kb upstream 16477 true scaffold_4: 3686604-3703080 Setaria italica
Seita.4G050000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3686604-3687103 Setaria italica
Seita.4G050000 0.5kb downstream 0.5kb downstream 16477 true scaffold_4: 3687104-3703580 Setaria italica
Seita.4G050000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3703081-3703580 Setaria italica
Seita.4G050000 1.0kb upstream 1.0kb upstream 16977 true scaffold_4: 3686104-3703080 Setaria italica
Seita.4G050000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3686104-3687103 Setaria italica
Seita.4G050000 1.0kb downstream 1.0kb downstream 16977 true scaffold_4: 3687104-3704080 Setaria italica
Seita.4G050000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3703081-3704080 Setaria italica
Seita.4G050000 2.0kb upstream 2.0kb upstream 17977 true scaffold_4: 3685104-3703080 Setaria italica
Seita.4G050000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3685104-3687103 Setaria italica
Seita.4G050000 2.0kb downstream 2.0kb downstream 17977 true scaffold_4: 3687104-3705080 Setaria italica
Seita.4G050000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3703081-3705080 Setaria italica
Seita.4G050000 5.0kb upstream 5.0kb upstream 20977 true scaffold_4: 3682104-3703080 Setaria italica
Seita.4G050000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3682104-3687103 Setaria italica
Seita.4G050000 5.0kb downstream 5.0kb downstream 20977 true scaffold_4: 3687104-3708080 Setaria italica
Seita.4G050000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3703081-3708080 Setaria italica
Seita.4G050000 10.0kb upstream 10.0kb upstream 25977 true scaffold_4: 3677104-3703080 Setaria italica
Seita.4G050000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3677104-3687103 Setaria italica
Seita.4G050000 10.0kb downstream 10.0kb downstream 25977 true scaffold_4: 3687104-3713080 Setaria italica
Seita.4G050000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3703081-3713080 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194832 5267 Panicoideae View MSA
124572309 5269 Grass View MSA
122051163 5273 Angiosperm View MSA
121347605 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.709     High High
cufflinks 22.418     High  
cufflinks 19.991     High  
cufflinks 17.95     High  
cufflinks 13.029     High  
cufflinks 22.242     High  
cufflinks 18.639     High  
cufflinks 11.999       Low
cufflinks 12.192       Low
cufflinks 12.704        
cufflinks 29.684     High High
cufflinks 17.653     High  
cufflinks 15.477     High  
cufflinks 14.212     High  
cufflinks 18.203     High  
cufflinks 31.24     High High
cufflinks 14.78     High  
cufflinks 39.689     High High
cufflinks 11.45     High Low
cufflinks 14.534     High  

0 Strain