Gene : Seita.4G048100 S. italica v2.2
Defline:  (1 of 13) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  481
Name:  ? Seita.4G048100 Secondary Identifier:  ? PAC:32708521
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G048100 0.5kb upstream 0.5kb upstream 5023 true scaffold_4: 3561923-3566945 Setaria italica
Seita.4G048100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3561923-3562422 Setaria italica
Seita.4G048100 0.5kb downstream 0.5kb downstream 5023 true scaffold_4: 3562423-3567445 Setaria italica
Seita.4G048100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3566946-3567445 Setaria italica
Seita.4G048100 1.0kb upstream 1.0kb upstream 5523 true scaffold_4: 3561423-3566945 Setaria italica
Seita.4G048100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3561423-3562422 Setaria italica
Seita.4G048100 1.0kb downstream 1.0kb downstream 5523 true scaffold_4: 3562423-3567945 Setaria italica
Seita.4G048100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3566946-3567945 Setaria italica
Seita.4G048100 2.0kb upstream 2.0kb upstream 6523 true scaffold_4: 3560423-3566945 Setaria italica
Seita.4G048100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3560423-3562422 Setaria italica
Seita.4G048100 2.0kb downstream 2.0kb downstream 6523 true scaffold_4: 3562423-3568945 Setaria italica
Seita.4G048100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3566946-3568945 Setaria italica
Seita.4G048100 5.0kb upstream 5.0kb upstream 9523 true scaffold_4: 3557423-3566945 Setaria italica
Seita.4G048100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3557423-3562422 Setaria italica
Seita.4G048100 5.0kb downstream 5.0kb downstream 9523 true scaffold_4: 3562423-3571945 Setaria italica
Seita.4G048100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3566946-3571945 Setaria italica
Seita.4G048100 10.0kb upstream 10.0kb upstream 14523 true scaffold_4: 3552423-3566945 Setaria italica
Seita.4G048100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3552423-3562422 Setaria italica
Seita.4G048100 10.0kb downstream 10.0kb downstream 14523 true scaffold_4: 3562423-3576945 Setaria italica
Seita.4G048100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3566946-3576945 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179255 5267 Panicoideae View MSA
124582697 5269 Grass View MSA
122043387 5273 Angiosperm View MSA
121310115 5274 Embryophyte View MSA
123347692 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.511        
cufflinks 9.384       High
cufflinks 3.803        
cufflinks 1.314        
cufflinks 0.276       Low
cufflinks 12.071       High
cufflinks 2.973        
cufflinks 2.053        
cufflinks 1.098        
cufflinks 1.955        
cufflinks 2.098        
cufflinks 1.005        
cufflinks 1.872        
cufflinks 2.058        
cufflinks 2.765        
cufflinks 1.361        
cufflinks 1.5        
cufflinks 0.48       Low
cufflinks 3.163        
cufflinks 2.099        

0 Strain