Gene : Seita.4G052500 S. italica v2.2
Defline:  (1 of 29) PTHR11353 - CHAPERONIN Genomic Order:  525
Name:  ? Seita.4G052500 Secondary Identifier:  ? PAC:32708881
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G052500 0.5kb upstream 0.5kb upstream 6299 true scaffold_4: 3925398-3931696 Setaria italica
Seita.4G052500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3931197-3931696 Setaria italica
Seita.4G052500 0.5kb downstream 0.5kb downstream 6299 true scaffold_4: 3924898-3931196 Setaria italica
Seita.4G052500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3924898-3925397 Setaria italica
Seita.4G052500 1.0kb upstream 1.0kb upstream 6799 true scaffold_4: 3925398-3932196 Setaria italica
Seita.4G052500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3931197-3932196 Setaria italica
Seita.4G052500 1.0kb downstream 1.0kb downstream 6799 true scaffold_4: 3924398-3931196 Setaria italica
Seita.4G052500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3924398-3925397 Setaria italica
Seita.4G052500 2.0kb upstream 2.0kb upstream 7799 true scaffold_4: 3925398-3933196 Setaria italica
Seita.4G052500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3931197-3933196 Setaria italica
Seita.4G052500 2.0kb downstream 2.0kb downstream 7799 true scaffold_4: 3923398-3931196 Setaria italica
Seita.4G052500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3923398-3925397 Setaria italica
Seita.4G052500 5.0kb upstream 5.0kb upstream 10799 true scaffold_4: 3925398-3936196 Setaria italica
Seita.4G052500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3931197-3936196 Setaria italica
Seita.4G052500 5.0kb downstream 5.0kb downstream 10799 true scaffold_4: 3920398-3931196 Setaria italica
Seita.4G052500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3920398-3925397 Setaria italica
Seita.4G052500 10.0kb upstream 10.0kb upstream 15799 true scaffold_4: 3925398-3941196 Setaria italica
Seita.4G052500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3931197-3941196 Setaria italica
Seita.4G052500 10.0kb downstream 10.0kb downstream 15799 true scaffold_4: 3915398-3931196 Setaria italica
Seita.4G052500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3915398-3925397 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194734 5267 Panicoideae View MSA
124575057 5269 Grass View MSA
122046551 5273 Angiosperm View MSA
121345633 5274 Embryophyte View MSA
123423902 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.69     High  
cufflinks 20.716     High  
cufflinks 5.868       Low
cufflinks 4.204       Low
cufflinks 4.915       Low
cufflinks 23.353     High High
cufflinks 13.939     High  
cufflinks 20.05     High  
cufflinks 17.961     High  
cufflinks 13.163        
cufflinks 18.884     High  
cufflinks 18.028     High  
cufflinks 11.59        
cufflinks 9.177        
cufflinks 19.906     High  
cufflinks 9.801        
cufflinks 22.189     High  
cufflinks 11.581     High  
cufflinks 5.563       Low
cufflinks 22.58     High High

0 Strain