Gene : Seita.4G151700 S. italica v2.2
Defline:  (1 of 1) PF00438//PF05916//PF16922 - S-adenosylmethionine synthetase, N-terminal domain (S-AdoMet_synt_N) // GINS complex protein (Sld5) // DNA replication complex GINS protein SLD5 C-terminus (SLD5_C) Genomic Order:  1517
Name:  ? Seita.4G151700 Secondary Identifier:  ? PAC:32709685
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G151700 0.5kb upstream 0.5kb upstream 4068 true scaffold_4: 20046913-20050980 Setaria italica
Seita.4G151700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 20046913-20047412 Setaria italica
Seita.4G151700 0.5kb downstream 0.5kb downstream 4068 true scaffold_4: 20047413-20051480 Setaria italica
Seita.4G151700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 20050981-20051480 Setaria italica
Seita.4G151700 1.0kb upstream 1.0kb upstream 4568 true scaffold_4: 20046413-20050980 Setaria italica
Seita.4G151700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 20046413-20047412 Setaria italica
Seita.4G151700 1.0kb downstream 1.0kb downstream 4568 true scaffold_4: 20047413-20051980 Setaria italica
Seita.4G151700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 20050981-20051980 Setaria italica
Seita.4G151700 2.0kb upstream 2.0kb upstream 5568 true scaffold_4: 20045413-20050980 Setaria italica
Seita.4G151700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 20045413-20047412 Setaria italica
Seita.4G151700 2.0kb downstream 2.0kb downstream 5568 true scaffold_4: 20047413-20052980 Setaria italica
Seita.4G151700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 20050981-20052980 Setaria italica
Seita.4G151700 5.0kb upstream 5.0kb upstream 8568 true scaffold_4: 20042413-20050980 Setaria italica
Seita.4G151700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 20042413-20047412 Setaria italica
Seita.4G151700 5.0kb downstream 5.0kb downstream 8568 true scaffold_4: 20047413-20055980 Setaria italica
Seita.4G151700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 20050981-20055980 Setaria italica
Seita.4G151700 10.0kb upstream 10.0kb upstream 13568 true scaffold_4: 20037413-20050980 Setaria italica
Seita.4G151700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 20037413-20047412 Setaria italica
Seita.4G151700 10.0kb downstream 10.0kb downstream 13568 true scaffold_4: 20047413-20060980 Setaria italica
Seita.4G151700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 20050981-20060980 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064970 5267 Panicoideae View MSA
124590271 5269 Grass View MSA
122043096 5273 Angiosperm View MSA
121344568 5274 Embryophyte View MSA
123424652 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.681     High  
cufflinks 18.191     High  
cufflinks 12.405     High  
cufflinks 15.18     High  
cufflinks 10.592       Low
cufflinks 18.836     High High
cufflinks 11.075       Low
cufflinks 15.243     High  
cufflinks 9.19       Low
cufflinks 26.979     High High
cufflinks 14.32     High  
cufflinks 15.354     High  
cufflinks 14.413     High  
cufflinks 16.35     High  
cufflinks 14.811     High  
cufflinks 14.287     High  
cufflinks 16.085     High  
cufflinks 17.477     High  
cufflinks 13.501     High  
cufflinks 14.087        

0 Strain