Gene : Seita.4G160900 S. italica v2.2
Defline:  (1 of 4) PTHR13789:SF1 - FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN-RELATED Genomic Order:  1609
Name:  ? Seita.4G160900 Secondary Identifier:  ? PAC:32707599
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G160900 0.5kb upstream 0.5kb upstream 2501 true scaffold_4: 24261371-24263871 Setaria italica
Seita.4G160900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 24261371-24261870 Setaria italica
Seita.4G160900 0.5kb downstream 0.5kb downstream 2501 true scaffold_4: 24261871-24264371 Setaria italica
Seita.4G160900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 24263872-24264371 Setaria italica
Seita.4G160900 1.0kb upstream 1.0kb upstream 3001 true scaffold_4: 24260871-24263871 Setaria italica
Seita.4G160900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 24260871-24261870 Setaria italica
Seita.4G160900 1.0kb downstream 1.0kb downstream 3001 true scaffold_4: 24261871-24264871 Setaria italica
Seita.4G160900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 24263872-24264871 Setaria italica
Seita.4G160900 2.0kb upstream 2.0kb upstream 4001 true scaffold_4: 24259871-24263871 Setaria italica
Seita.4G160900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 24259871-24261870 Setaria italica
Seita.4G160900 2.0kb downstream 2.0kb downstream 4001 true scaffold_4: 24261871-24265871 Setaria italica
Seita.4G160900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 24263872-24265871 Setaria italica
Seita.4G160900 5.0kb upstream 5.0kb upstream 7001 true scaffold_4: 24256871-24263871 Setaria italica
Seita.4G160900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 24256871-24261870 Setaria italica
Seita.4G160900 5.0kb downstream 5.0kb downstream 7001 true scaffold_4: 24261871-24268871 Setaria italica
Seita.4G160900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 24263872-24268871 Setaria italica
Seita.4G160900 10.0kb upstream 10.0kb upstream 12001 true scaffold_4: 24251871-24263871 Setaria italica
Seita.4G160900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 24251871-24261870 Setaria italica
Seita.4G160900 10.0kb downstream 10.0kb downstream 12001 true scaffold_4: 24261871-24273871 Setaria italica
Seita.4G160900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 24263872-24273871 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122200084 5267 Panicoideae View MSA
124587498 5269 Grass View MSA
122050321 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121311854 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.26        
cufflinks 7.805       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.671       High
cufflinks 0.856        
cufflinks 0.902        
cufflinks 0.117       Low
cufflinks 0.192     Low  
cufflinks 0.035     Low Low
cufflinks 0.532        
cufflinks 1.528        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.279        
cufflinks 0.3        
cufflinks 1.053        
cufflinks 0.043     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.102        

0 Strain