Gene : Seita.4G161800 S. italica v2.2
Defline:  (1 of 2) PTHR12446//PTHR12446:SF29 - TESMIN/TSO1-RELATED Genomic Order:  1618
Name:  ? Seita.4G161800 Secondary Identifier:  ? PAC:32708524
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G161800 0.5kb upstream 0.5kb upstream 11663 true scaffold_4: 24657080-24668742 Setaria italica
Seita.4G161800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 24657080-24657579 Setaria italica
Seita.4G161800 0.5kb downstream 0.5kb downstream 11663 true scaffold_4: 24657580-24669242 Setaria italica
Seita.4G161800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 24668743-24669242 Setaria italica
Seita.4G161800 1.0kb upstream 1.0kb upstream 12163 true scaffold_4: 24656580-24668742 Setaria italica
Seita.4G161800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 24656580-24657579 Setaria italica
Seita.4G161800 1.0kb downstream 1.0kb downstream 12163 true scaffold_4: 24657580-24669742 Setaria italica
Seita.4G161800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 24668743-24669742 Setaria italica
Seita.4G161800 2.0kb upstream 2.0kb upstream 13163 true scaffold_4: 24655580-24668742 Setaria italica
Seita.4G161800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 24655580-24657579 Setaria italica
Seita.4G161800 2.0kb downstream 2.0kb downstream 13163 true scaffold_4: 24657580-24670742 Setaria italica
Seita.4G161800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 24668743-24670742 Setaria italica
Seita.4G161800 5.0kb upstream 5.0kb upstream 16163 true scaffold_4: 24652580-24668742 Setaria italica
Seita.4G161800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 24652580-24657579 Setaria italica
Seita.4G161800 5.0kb downstream 5.0kb downstream 16163 true scaffold_4: 24657580-24673742 Setaria italica
Seita.4G161800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 24668743-24673742 Setaria italica
Seita.4G161800 10.0kb upstream 10.0kb upstream 21163 true scaffold_4: 24647580-24668742 Setaria italica
Seita.4G161800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 24647580-24657579 Setaria italica
Seita.4G161800 10.0kb downstream 10.0kb downstream 21163 true scaffold_4: 24657580-24678742 Setaria italica
Seita.4G161800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 24668743-24678742 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179253 5267 Panicoideae View MSA
124570613 5269 Grass View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.432        
cufflinks 0.715       High
cufflinks 0.365        
cufflinks 0.283       Low
cufflinks 0.313        
cufflinks 0.732       High
cufflinks 0.537        
cufflinks 0.321        
cufflinks 0.385        
cufflinks 0.203     Low Low
cufflinks 0.402        
cufflinks 0.575        
cufflinks 0.471        
cufflinks 0.397        
cufflinks 0.621       High
cufflinks 0.494        
cufflinks 0.483        
cufflinks 0.469        
cufflinks 0.296       Low
cufflinks 0.563        

0 Strain