Gene : Seita.4G159700 S. italica v2.2
Defline:  (1 of 1) PTHR10666//PTHR10666:SF163 - UBIQUITIN Genomic Order:  1597
Name:  ? Seita.4G159700 Secondary Identifier:  ? PAC:32709107
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6351 Setaria italica pathologic  
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G159700 0.5kb upstream 0.5kb upstream 3934 true scaffold_4: 23944893-23948826 Setaria italica
Seita.4G159700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 23944893-23945392 Setaria italica
Seita.4G159700 0.5kb downstream 0.5kb downstream 3934 true scaffold_4: 23945393-23949326 Setaria italica
Seita.4G159700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 23948827-23949326 Setaria italica
Seita.4G159700 1.0kb upstream 1.0kb upstream 4434 true scaffold_4: 23944393-23948826 Setaria italica
Seita.4G159700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 23944393-23945392 Setaria italica
Seita.4G159700 1.0kb downstream 1.0kb downstream 4434 true scaffold_4: 23945393-23949826 Setaria italica
Seita.4G159700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 23948827-23949826 Setaria italica
Seita.4G159700 2.0kb upstream 2.0kb upstream 5434 true scaffold_4: 23943393-23948826 Setaria italica
Seita.4G159700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 23943393-23945392 Setaria italica
Seita.4G159700 2.0kb downstream 2.0kb downstream 5434 true scaffold_4: 23945393-23950826 Setaria italica
Seita.4G159700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 23948827-23950826 Setaria italica
Seita.4G159700 5.0kb upstream 5.0kb upstream 8434 true scaffold_4: 23940393-23948826 Setaria italica
Seita.4G159700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 23940393-23945392 Setaria italica
Seita.4G159700 5.0kb downstream 5.0kb downstream 8434 true scaffold_4: 23945393-23953826 Setaria italica
Seita.4G159700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 23948827-23953826 Setaria italica
Seita.4G159700 10.0kb upstream 10.0kb upstream 13434 true scaffold_4: 23935393-23948826 Setaria italica
Seita.4G159700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 23935393-23945392 Setaria italica
Seita.4G159700 10.0kb downstream 10.0kb downstream 13434 true scaffold_4: 23945393-23958826 Setaria italica
Seita.4G159700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 23948827-23958826 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191721 5267 Panicoideae View MSA
124574453 5269 Grass View MSA
122042633 5273 Angiosperm View MSA
121350148 5274 Embryophyte View MSA
123381595 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 90.371     High Low
cufflinks 100.43     High  
cufflinks 149.569     High  
cufflinks 142.495     High  
cufflinks 143.6     High  
cufflinks 108.943     High  
cufflinks 127.892     High  
cufflinks 113.251     High  
cufflinks 144.675     High  
cufflinks 47.996     High Low
cufflinks 103.966     High  
cufflinks 188.481     High High
cufflinks 133.979     High  
cufflinks 198.14     High High
cufflinks 150.166     High  
cufflinks 115.002     High  
cufflinks 134.376     High  
cufflinks 178.211     High High
cufflinks 155.081     High  
cufflinks 112.981     High  

0 Strain