Gene : Seita.4G164600 S. italica v2.2
Genomic Order:  1646 Name:  ? Seita.4G164600
Secondary Identifier:  ? PAC:32706672
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G164600 0.5kb upstream 0.5kb upstream 5418 true scaffold_4: 25721302-25726719 Setaria italica
Seita.4G164600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 25726220-25726719 Setaria italica
Seita.4G164600 0.5kb downstream 0.5kb downstream 5418 true scaffold_4: 25720802-25726219 Setaria italica
Seita.4G164600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 25720802-25721301 Setaria italica
Seita.4G164600 1.0kb upstream 1.0kb upstream 5918 true scaffold_4: 25721302-25727219 Setaria italica
Seita.4G164600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 25726220-25727219 Setaria italica
Seita.4G164600 1.0kb downstream 1.0kb downstream 5918 true scaffold_4: 25720302-25726219 Setaria italica
Seita.4G164600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 25720302-25721301 Setaria italica
Seita.4G164600 2.0kb upstream 2.0kb upstream 6918 true scaffold_4: 25721302-25728219 Setaria italica
Seita.4G164600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 25726220-25728219 Setaria italica
Seita.4G164600 2.0kb downstream 2.0kb downstream 6918 true scaffold_4: 25719302-25726219 Setaria italica
Seita.4G164600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 25719302-25721301 Setaria italica
Seita.4G164600 5.0kb upstream 5.0kb upstream 9918 true scaffold_4: 25721302-25731219 Setaria italica
Seita.4G164600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 25726220-25731219 Setaria italica
Seita.4G164600 5.0kb downstream 5.0kb downstream 9918 true scaffold_4: 25716302-25726219 Setaria italica
Seita.4G164600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 25716302-25721301 Setaria italica
Seita.4G164600 10.0kb upstream 10.0kb upstream 14918 true scaffold_4: 25721302-25736219 Setaria italica
Seita.4G164600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 25726220-25736219 Setaria italica
Seita.4G164600 10.0kb downstream 10.0kb downstream 14918 true scaffold_4: 25711302-25726219 Setaria italica
Seita.4G164600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 25711302-25721301 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191647 5267 Panicoideae View MSA
124574760 5269 Grass View MSA
122044970 5273 Angiosperm View MSA
121310375 5274 Embryophyte View MSA
123347876 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.932        
cufflinks 2.535       High
cufflinks 0.256       Low
cufflinks 0.249       Low
cufflinks 0.31       Low
cufflinks 2.547       High
cufflinks 0.988        
cufflinks 0.903        
cufflinks 0.72        
cufflinks 0.569        
cufflinks 0.769        
cufflinks 0.562        
cufflinks 0.36        
cufflinks 0.286       Low
cufflinks 0.782        
cufflinks 0.91        
cufflinks 0.674        
cufflinks 0.697        
cufflinks 0.253       Low
cufflinks 0.73        

0 Strain