Gene : Seita.4G169900 S. italica v2.2
Defline:  (1 of 1) PTHR11019//PTHR11019:SF102 - THIJ/PFPI Genomic Order:  1699
Name:  ? Seita.4G169900 Secondary Identifier:  ? PAC:32709219
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G169900 0.5kb upstream 0.5kb upstream 9720 true scaffold_4: 27104552-27114271 Setaria italica
Seita.4G169900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 27113772-27114271 Setaria italica
Seita.4G169900 0.5kb downstream 0.5kb downstream 9720 true scaffold_4: 27104052-27113771 Setaria italica
Seita.4G169900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 27104052-27104551 Setaria italica
Seita.4G169900 1.0kb upstream 1.0kb upstream 10220 true scaffold_4: 27104552-27114771 Setaria italica
Seita.4G169900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 27113772-27114771 Setaria italica
Seita.4G169900 1.0kb downstream 1.0kb downstream 10220 true scaffold_4: 27103552-27113771 Setaria italica
Seita.4G169900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 27103552-27104551 Setaria italica
Seita.4G169900 2.0kb upstream 2.0kb upstream 11220 true scaffold_4: 27104552-27115771 Setaria italica
Seita.4G169900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 27113772-27115771 Setaria italica
Seita.4G169900 2.0kb downstream 2.0kb downstream 11220 true scaffold_4: 27102552-27113771 Setaria italica
Seita.4G169900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 27102552-27104551 Setaria italica
Seita.4G169900 5.0kb upstream 5.0kb upstream 14220 true scaffold_4: 27104552-27118771 Setaria italica
Seita.4G169900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 27113772-27118771 Setaria italica
Seita.4G169900 5.0kb downstream 5.0kb downstream 14220 true scaffold_4: 27099552-27113771 Setaria italica
Seita.4G169900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 27099552-27104551 Setaria italica
Seita.4G169900 10.0kb upstream 10.0kb upstream 19220 true scaffold_4: 27104552-27123771 Setaria italica
Seita.4G169900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 27113772-27123771 Setaria italica
Seita.4G169900 10.0kb downstream 10.0kb downstream 19220 true scaffold_4: 27094552-27113771 Setaria italica
Seita.4G169900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 27094552-27104551 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178689 5267 Panicoideae View MSA
124578685 5269 Grass View MSA
122047245 5273 Angiosperm View MSA
121350648 5274 Embryophyte View MSA
123428584 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.749        
cufflinks 6.83        
cufflinks 5.224        
cufflinks 5.72        
cufflinks 8.981       High
cufflinks 6.423        
cufflinks 7.752        
cufflinks 8.584       High
cufflinks 9.368       High
cufflinks 5.34        
cufflinks 4.812       Low
cufflinks 7.131        
cufflinks 4.772       Low
cufflinks 6.023        
cufflinks 3.808       Low
cufflinks 8.084        
cufflinks 6.998        
cufflinks 7.118        
cufflinks 6.334        
cufflinks 5.225        

0 Strain