Gene : Seita.4G168400 S. italica v2.2
Defline:  (1 of 2) PTHR10217//PTHR10217:SF524 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL Genomic Order:  1684
Name:  ? Seita.4G168400 Secondary Identifier:  ? PAC:32709573
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G168400 0.5kb upstream 0.5kb upstream 9508 true scaffold_4: 26583922-26593429 Setaria italica
Seita.4G168400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 26583922-26584421 Setaria italica
Seita.4G168400 0.5kb downstream 0.5kb downstream 9508 true scaffold_4: 26584422-26593929 Setaria italica
Seita.4G168400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 26593430-26593929 Setaria italica
Seita.4G168400 1.0kb upstream 1.0kb upstream 10008 true scaffold_4: 26583422-26593429 Setaria italica
Seita.4G168400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 26583422-26584421 Setaria italica
Seita.4G168400 1.0kb downstream 1.0kb downstream 10008 true scaffold_4: 26584422-26594429 Setaria italica
Seita.4G168400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 26593430-26594429 Setaria italica
Seita.4G168400 2.0kb upstream 2.0kb upstream 11008 true scaffold_4: 26582422-26593429 Setaria italica
Seita.4G168400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 26582422-26584421 Setaria italica
Seita.4G168400 2.0kb downstream 2.0kb downstream 11008 true scaffold_4: 26584422-26595429 Setaria italica
Seita.4G168400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 26593430-26595429 Setaria italica
Seita.4G168400 5.0kb upstream 5.0kb upstream 14008 true scaffold_4: 26579422-26593429 Setaria italica
Seita.4G168400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 26579422-26584421 Setaria italica
Seita.4G168400 5.0kb downstream 5.0kb downstream 14008 true scaffold_4: 26584422-26598429 Setaria italica
Seita.4G168400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 26593430-26598429 Setaria italica
Seita.4G168400 10.0kb upstream 10.0kb upstream 19008 true scaffold_4: 26574422-26593429 Setaria italica
Seita.4G168400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 26574422-26584421 Setaria italica
Seita.4G168400 10.0kb downstream 10.0kb downstream 19008 true scaffold_4: 26584422-26603429 Setaria italica
Seita.4G168400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 26593430-26603429 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190521 5267 Panicoideae View MSA
124585108 5269 Grass View MSA
122044448 5273 Angiosperm View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.863        
cufflinks 4.519       Low
cufflinks 14.122     High High
cufflinks 13.772     High  
cufflinks 11.101     High  
cufflinks 4.864       Low
cufflinks 7.828        
cufflinks 7.499        
cufflinks 8.71        
cufflinks 4.318       Low
cufflinks 6.995        
cufflinks 12.767        
cufflinks 8.612        
cufflinks 9.212        
cufflinks 6.076        
cufflinks 12.113     High  
cufflinks 6.974        
cufflinks 29.547     High High
cufflinks 12.164     High  
cufflinks 5.323       Low

0 Strain