Gene : Seita.4G168600 S. italica v2.2
Defline:  (1 of 1) PTHR11558//PTHR11558:SF29 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  1686
Name:  ? Seita.4G168600 Secondary Identifier:  ? PAC:32708340
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BSUBPOLYAMSYN-PWY Setaria italica pathologic  
Sitalica POLYAMINSYN3-PWY Setaria italica pathologic  
Sitalica PWY-7528 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G168600 0.5kb upstream 0.5kb upstream 5729 true scaffold_4: 26627510-26633238 Setaria italica
Seita.4G168600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 26627510-26628009 Setaria italica
Seita.4G168600 0.5kb downstream 0.5kb downstream 5729 true scaffold_4: 26628010-26633738 Setaria italica
Seita.4G168600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 26633239-26633738 Setaria italica
Seita.4G168600 1.0kb upstream 1.0kb upstream 6229 true scaffold_4: 26627010-26633238 Setaria italica
Seita.4G168600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 26627010-26628009 Setaria italica
Seita.4G168600 1.0kb downstream 1.0kb downstream 6229 true scaffold_4: 26628010-26634238 Setaria italica
Seita.4G168600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 26633239-26634238 Setaria italica
Seita.4G168600 2.0kb upstream 2.0kb upstream 7229 true scaffold_4: 26626010-26633238 Setaria italica
Seita.4G168600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 26626010-26628009 Setaria italica
Seita.4G168600 2.0kb downstream 2.0kb downstream 7229 true scaffold_4: 26628010-26635238 Setaria italica
Seita.4G168600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 26633239-26635238 Setaria italica
Seita.4G168600 5.0kb upstream 5.0kb upstream 10229 true scaffold_4: 26623010-26633238 Setaria italica
Seita.4G168600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 26623010-26628009 Setaria italica
Seita.4G168600 5.0kb downstream 5.0kb downstream 10229 true scaffold_4: 26628010-26638238 Setaria italica
Seita.4G168600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 26633239-26638238 Setaria italica
Seita.4G168600 10.0kb upstream 10.0kb upstream 15229 true scaffold_4: 26618010-26633238 Setaria italica
Seita.4G168600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 26618010-26628009 Setaria italica
Seita.4G168600 10.0kb downstream 10.0kb downstream 15229 true scaffold_4: 26628010-26643238 Setaria italica
Seita.4G168600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 26633239-26643238 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187553 5267 Panicoideae View MSA
124577208 5269 Grass View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.464        
cufflinks 11.48        
cufflinks 13.458     High  
cufflinks 10.758        
cufflinks 9.608        
cufflinks 10.152        
cufflinks 17.314     High  
cufflinks 15.932     High  
cufflinks 6.035        
cufflinks 1.114       Low
cufflinks 1.657       Low
cufflinks 4.38        
cufflinks 8.268        
cufflinks 18.449     High  
cufflinks 4.25        
cufflinks 22.146     High High
cufflinks 3.764        
cufflinks 10.137        
cufflinks 47.393     High High
cufflinks 4.485        

0 Strain