Gene : Seita.4G173900 S. italica v2.2
Defline:  (1 of 2) PTHR12919:SF22 - 30S RIBOSOMAL PROTEIN S16, CHLOROPLASTIC Genomic Order:  1739
Name:  ? Seita.4G173900 Secondary Identifier:  ? PAC:32707537
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G173900 0.5kb upstream 0.5kb upstream 1601 true scaffold_4: 27915708-27917308 Setaria italica
Seita.4G173900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 27916809-27917308 Setaria italica
Seita.4G173900 0.5kb downstream 0.5kb downstream 1601 true scaffold_4: 27915208-27916808 Setaria italica
Seita.4G173900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 27915208-27915707 Setaria italica
Seita.4G173900 1.0kb upstream 1.0kb upstream 2101 true scaffold_4: 27915708-27917808 Setaria italica
Seita.4G173900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 27916809-27917808 Setaria italica
Seita.4G173900 1.0kb downstream 1.0kb downstream 2101 true scaffold_4: 27914708-27916808 Setaria italica
Seita.4G173900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 27914708-27915707 Setaria italica
Seita.4G173900 2.0kb upstream 2.0kb upstream 3101 true scaffold_4: 27915708-27918808 Setaria italica
Seita.4G173900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 27916809-27918808 Setaria italica
Seita.4G173900 2.0kb downstream 2.0kb downstream 3101 true scaffold_4: 27913708-27916808 Setaria italica
Seita.4G173900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 27913708-27915707 Setaria italica
Seita.4G173900 5.0kb upstream 5.0kb upstream 6101 true scaffold_4: 27915708-27921808 Setaria italica
Seita.4G173900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 27916809-27921808 Setaria italica
Seita.4G173900 5.0kb downstream 5.0kb downstream 6101 true scaffold_4: 27910708-27916808 Setaria italica
Seita.4G173900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 27910708-27915707 Setaria italica
Seita.4G173900 10.0kb upstream 10.0kb upstream 11101 true scaffold_4: 27915708-27926808 Setaria italica
Seita.4G173900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 27916809-27926808 Setaria italica
Seita.4G173900 10.0kb downstream 10.0kb downstream 11101 true scaffold_4: 27905708-27916808 Setaria italica
Seita.4G173900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 27905708-27915707 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029145 5273 Angiosperm View MSA
122053664 5267 Panicoideae Singleton cluster - no MSA
124353523 5269 Grass Singleton cluster - no MSA
121298528 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.769        
cufflinks 0.325        
cufflinks 1.858        
cufflinks 1.539        
cufflinks 0.968        
cufflinks 0.184       Low
cufflinks 1.002        
cufflinks 0.646        
cufflinks 0.894        
cufflinks 32.535     High High
cufflinks 0.95        
cufflinks 0.358        
cufflinks 4.391       High
cufflinks 1.798        
cufflinks 0.175       Low
cufflinks 2.009        
cufflinks 0.409        
cufflinks 2.484        
cufflinks 2.203        
cufflinks 0.219       Low

0 Strain