Gene : Seita.4G174000 S. italica v2.2
Defline:  (1 of 3) PTHR35325:SF1 - PHOTOSYSTEM II REACTION CENTER PROTEIN K Genomic Order:  1740
Name:  ? Seita.4G174000 Secondary Identifier:  ? PAC:32709089
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G174000 0.5kb upstream 0.5kb upstream 830 true scaffold_4: 27917446-27918275 Setaria italica
Seita.4G174000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 27917446-27917945 Setaria italica
Seita.4G174000 0.5kb downstream 0.5kb downstream 830 true scaffold_4: 27917946-27918775 Setaria italica
Seita.4G174000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 27918276-27918775 Setaria italica
Seita.4G174000 1.0kb upstream 1.0kb upstream 1330 true scaffold_4: 27916946-27918275 Setaria italica
Seita.4G174000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 27916946-27917945 Setaria italica
Seita.4G174000 1.0kb downstream 1.0kb downstream 1330 true scaffold_4: 27917946-27919275 Setaria italica
Seita.4G174000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 27918276-27919275 Setaria italica
Seita.4G174000 2.0kb upstream 2.0kb upstream 2330 true scaffold_4: 27915946-27918275 Setaria italica
Seita.4G174000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 27915946-27917945 Setaria italica
Seita.4G174000 2.0kb downstream 2.0kb downstream 2330 true scaffold_4: 27917946-27920275 Setaria italica
Seita.4G174000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 27918276-27920275 Setaria italica
Seita.4G174000 5.0kb upstream 5.0kb upstream 5330 true scaffold_4: 27912946-27918275 Setaria italica
Seita.4G174000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 27912946-27917945 Setaria italica
Seita.4G174000 5.0kb downstream 5.0kb downstream 5330 true scaffold_4: 27917946-27923275 Setaria italica
Seita.4G174000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 27918276-27923275 Setaria italica
Seita.4G174000 10.0kb upstream 10.0kb upstream 10330 true scaffold_4: 27907946-27918275 Setaria italica
Seita.4G174000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 27907946-27917945 Setaria italica
Seita.4G174000 10.0kb downstream 10.0kb downstream 10330 true scaffold_4: 27917946-27928275 Setaria italica
Seita.4G174000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 27918276-27928275 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122006062 5273 Angiosperm View MSA
122117495 5267 Panicoideae View MSA
124411607 5269 Grass View MSA
121276183 5274 Embryophyte View MSA
123314477 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.052     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.33     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.116        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain